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Mutant Lines
12-0854-1

12-0854-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 26422239 [Map]; Strand: w
- AT5G66070.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT5G66070.2 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon2 (CDS)

GTGGGGACTT TGCNGGGANC ATGGNCAGGG GNTTTGATNG GCCANNAANC 
ATAGANCGGA ATTCNTCAGA GGAGCCGACN GAGGGNCTAT CTCACGCGCC 
NGCTTANCNN TCGAACTCTT TNAATCTTCC CTCCTCCTTT GGCAATCCGA 
TGAGTCTGGA ATTGGATGCC TTCTCTACTT GGTAACAATC TTCATCATCA 
TCACCACCAG ATTTTCTTTT ATTTTCTTAT GCTCAAATGC TTTTCCTATC 
TTATCTTTAT ATATATAGAT TGATGTCATT GCTAGCCTTT TGAGCGGGAG 
GCTTGTTCGT GAGCGTATCG GTCCTGCAAT GCTAAGTGCC GTCCANAGTC 
AGGTACAACT ACCATTTCTT TTCTTTGATG CATCTTTCAT TATCCTTCTC 
AACTTTTGTA TTANTAATAA ACANATGGGA GCTGTGGAGT CCCANTTCCA 
AGATCATACA NACATCCTTT GACACTGNCA TTTNAAAGGG TCTCACTGGG 
GACTCTNTNA CAGGATACNA GCCNGGGN

3 prime edge [+] show sequence

Chromosome: 5; Position: 26422123 [Map]; Strand: w
- AT5G66070.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron1 (CDS)
- AT5G66070.2 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron1 (CDS)

GTCCCCACTG AATCAAATCA ACAAACAAGT CAAATCATAT TCATATCGTA 
ATTGCAGAAA CAAGGAAAAT TCCTCAGGGG ATCACAGAGA TTTTAATGAA 
GATGAATGTG AAGAAAAGAA GGAACCTAAA GCGAAGAAGA AGGTGAAGAG 
AGCNGGAGAA GAGGTTGGCG AGAAGGGCAG AGACGGCGAA ATGGAAGGAA 
TCTTTAATCC GGTGGAGGAC GGAGATGGGA GACAGAGAAT AATAACCATC 
CATATCTGCA AAAGAGATGA AGAGGAGGAG GGAATGAATT TGTGTTTTCT 
TTGTCTGGAA AAACAAGGAA CCTTTCTTTT CTCCTTTTTA TTTGAAGATA 
TAATCAATCG ATTAGAAAAA GAGACCAAAG GCAAAGGAAC CTTCTCTCCG 
CTGACCGAAA GTTTCTTTAT TAATTAATAA TCACGCGTCT CATTTTTCTT 
AATATTCGAA AGGAAAATAT CTTACAACGA CGAGTGGATT TGATTATTTA 
AAGGAAACGA TGAGTGGGTA AGACTTTTGC GCCATTCTTC TGACTTTTTT 
GGCTTCCAAT TTAATCAAGA ACAAAAACCT TTACTTCTCT TTATTATACA 
ACAAGTTTTG TGTTAACATT ATCCTNTTTG TGAAACANAA ACACCACCCN 
CNTNTNNTNN TTCNATGCGC TTTTTTTTTT NCNTNNNCNT ACNNNNTNTN 
TTTGTTTTTT TTAANCNAAT NNNAANNCGN NCNNNGNNTN NT

AT5G66070.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66070.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 9487 Blast hits to 9461 proteins in 285 species: Archae - 0; Bacteria - 10; Metazoa - 2332; Fungi - 815; Plants - 5049; Viruses - 44; Other Eukaryotes - 1237 (source: NCBI BLink).
Link: InterPro Scan - TAIR