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12-0867-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 877408 [Map]; Strand: c
      • AT1G03510.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G03515.1 - [+] show detail - pre-tRNA
        Distance: -240; Region: promoter
    Flanking Genome Sequence: 12-0867-1 - 5-prime edge 
    GAACCAAGGA AACCATGAAC AAGCTCTTAA TCTCTTTCTT CAAATGCATT 
    CTTCTTTCGC CTTACCTCTC GATGCACACA GTCTTCTCAC TCGCTCTCAA 
    ATCGTGCGCT GCAGCTTTCC GTCCTGTTCT CGGTGGATCA GTCCATGCAC 
    ACTCCGTCAA ATCCAATTTT CTGTCGAACC CATTTGTTGG ATGCGCGTTA 
    CTCGATATGT ATGGTAAATG CTTGTCTGTT TCTCATGCTC GTAAACTGTT 
    CGACGAAATT CCTCAGAGGA ATGCGGTAGT ATGGAACGCG ATGATTTCGC 
    ATTACACACA TTGTGGGAAG GTTAAGGAAG CAGTGGAGTT GTATGAAGCT 
    ATGGATGTTA TGCCAAATGA GTCTTCTTTC AATGCTATCA TAAAGGGNTT 
    AGTNGGNACA NAANANGGGG NTTATAGAGC TATTGAATTA NCANNCNGGG 
    NCGNNNACCA NNCGTGCNCN NAGNNNNNNN NNGGGGGGGG GTTTANAAAA 
    AANNNGGGGG GGGGNNNNNG GGGGNNANGG GNGNGGGGGN NTTTANNANC 
    CGNGGGGGGG GGGNNNNNGG GNNCNNNNNG GAGGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 877524 [Map]; Strand: c
      • AT1G03510.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G03515.1 - [+] show detail - pre-tRNA
        Distance: -124; Region: promoter
    Flanking Genome Sequence: 12-0867-1 - 3-prime edge 
    CTTGGTTCGC GTAAGAGCTT AATTGTTTGG TGAGAGAGAT CAATTTAGTG 
    CAGCTCGACG CGTACGAAGA AGACATGGAG TGGTGGAGAT AGAGCTTTCG 
    GTGTTGGCGT CAGCCTTCAA GAAATACAAA TTAGTTTGTT GTTAAATAGT 
    TATGTTCTAA ACAACCAAAC AACAAAGTCG TTGTAGTATA GTGGTAAGTA 
    TTCCCGCCTG TCACGCGGGT GACCCGGGTT CGATCCCCGG CAACGGCGAT 
    CTTTTTTATT TTCGGCTGTA CAAGCTAATT GGGCCTTATT CTTGGTCCCC 
    TATAAATATG GCCCTATCAA TGCCACTTCA CTGACGCTAT ACGGCCCATA 
    AAAGCCCACT GCACGTCACT TGTTCTTAAT TCATGTGTTT CGAAGAAATT 
    TCTATAACCA AAAATTTATA ATCAAACAAA ACAATATACT GTACAACGTT 
    ATATTTTGCG TCATCAGTAG ATAACTTCAA GAACACTGTT TTCGCCTAAA 
    TTCTTCAGAG GAAAGTGTTT GAACAAGCTC CTGCAACCTC TCAGAACCAG 
    GTCCTGGTTT CAACACCGAG TCGTCACCTT GCACAGAGCA CTGATCATTG 
    CCATTAGCTG AACTCCCGAC ACACCATCCT CCTGGTGCAA ACCGGTGTGT 
    CCGTCCCAAT AGCTCTTTAT CGATCTTTGT CTAACGCANG ATCCGTTTTT 
    TGTGGAACTT GCGTGCAAAT GGAGCTTTGC TCTTGACCAT TTTNCNAAAT 
    T

AT1G03510.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 33405 Blast hits to 13221 proteins in 227 species: Archae - 0; Bacteria - 37; Metazoa - 55; Fungi - 85; Plants - 32781; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03515.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asp (anticodon: GTC)
Link
InterPro Scan - TAIR