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12-0890-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22695186 [Map]; Strand: w
      • AT5G56040.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G56040.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0890-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCCGGAGAT GTTCAACTGA GATTTCCATG AGAGGAGAGC TAGACCCTGT 
    TCGTCTATGG AAAAACAGGG GATGGAGAAG AAAAGAGAGG AGTGAAAAAG 
    AAGGAAGAGG AAGAAGCAGA ATCTAGGGTT ACNGTGGCAT TGGTGAAGAG 
    GGAGAGGAAG AAGAAGAAGT GAGAGATAGA GAGAGAGGTG CGTTGGGATT 
    GTGAAGCGAA GAACCCCATG GATTTGGTTT TTACTTTGAT TTTATAGAAA 
    TATATAAAAA CAGAGCAAAC CAAAGGAGAG AGAGAGAAGA AGAAGTAGTA 
    AAGGAAGATC TGGATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22695170 [Map]; Strand: w
      • AT5G56040.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G56040.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0890-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT NNTCNNNNGA GACAGCTAGG NCATGGGCGG 
    AAAGCCTNCT GAATCGCAAT NCTTGNNAAT GGGTGGNANT CAGATGCANC 
    TGAAATGAGG TGATCGNCTC GNAGATGCNN CCTCNNNNCT CCTGGATNTT 
    NAAGGTCCGT TACCAGGCCG ACGAATCTCC GACAGATAAA GTCTCTGACT 
    TTGCTCAGCT TAACCTCCGT GAATCTCACT GGTTCAATCC CTAAGGAGCT 
    TGGAGACTTG TCGGAGCTAG AAGTTCTTGA TTTAGCTGAT AATTCTCTCT 
    CTGGTGAAAT CCCTGTGGAT ATCTTCAAGC TCAAGAAACT AAAGATTCTG 
    TCTCTCAACA CAAATAATCT CGAAGGTGTG ATTCCATCGG AGTTAGGGAA 
    TCTCGTTAAC CTCATCGAGC TCACTCTCTT CGACAATAAA CTCGCCGGAG 
    AGATTCCTAG AACCATCGGA GAACTCAAGA ATCTAGAAAT CTTCCGTGCA 
    GGTGGTAACA AGAATCTCAN AGGAGAGCTT CCTTGGGAGA TTGGTAACTG 
    CGAAAGTCTT GTGACTTTAG GTCTCGCCNA AACAAGTCTC TCCGGTAGAC 
    TTCCGGCGNC GATCGGAAAC CTGAAAAAGG TCANACAATA NCTCTTTACA 
    CGTNACTCTT GTCTGGTCAA TCCCTGANGA NATTGGAAAC TGNNCAGAGC 
    TNAAACCTNT NCTTGNNCNN AACNNANCNN NGGTCANNCC NGNCNNGNGA 
    CGNNNAANA

AT5G56040.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56040.2

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 231331 Blast hits to 125911 proteins in 4380 species: Archae - 141; Bacteria - 23597; Metazoa - 71861; Fungi - 8804; Plants - 101197; Viruses - 340; Other Eukaryotes - 25391 (source: NCBI BLink).
Link
InterPro Scan - TAIR