Home
Mutant Lines
12-1005-1

12-1005-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 30117665 [Map]; Strand: w
- AT1G80060.1 - [+] show detail - Ubiquitin-like superfamily protein
  Distance: -77; Region: promoter
- AT1G80070.1 - [+] show detail - Pre-mRNA-processing-splicing factor
  Distance: -387; Region: promoter

ACTGTTGAGG GAGCTGAGCG AGCGAGCGAG AGAATCGGGA GAGTTTGTTT 
TCCGGGGAAA AACCGCAATT ACTGCTATAT AGCTCCCCAA TAAATGCCAA 
AACAAAAAAT CAAATTAAAG TTTGTCAATG GGCATCACGG CCCAAATCTA 
ATAATCAAAG GCCCAATAAC TTGATTCGAC AATACTTAGC GGGTTTGGAT 
AACCGCCTAA GCATCTGTTC GACACCGCCT ATTTTTTTTT TTNACTNNCC 
CCCCCNNANN NGCNNATNNA NGGCCNACNG GGANTAAAAA AAAAAAAGGG 
GNAAANCCCC CCCCCCCAAA ANNNTTNGGG GGTTTTTTTT TNNCAAAAAA 
NCCCNNNNNT TTTTNCCNNC CNTTTNAAAA AANNNCCCNG GNNNGGGGGN 
NTNNGGGNTT TTTTNNCCCC NAAANNCCCC NGGGGNTTTN NTTNGNANCC 
CCNNNNTTTG GGNAAAAANN NNANGGGGGG NCCCNNNNNN CCCCNGGGGG 
NGGGGGGGGN NNNANANCCC CCCCCNCCNN NGGNTTTTTT TTTTTNAANG 
GGGGTTNCCC CCNNTTTNAA ANNANNNCTC CNNGGGGNNN CCNNTTTTTG 
GGNNNAANAN NGGGTTNTTT TTCTNNNCNG GGGNNAGAAN NCCCNNNNNT 
TAAATTANNT NNAANANANN NNTAGNNANA AN

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 30117549 [Map]; Strand: w
  - AT1G80060.1 - [+] show detail - Ubiquitin-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G80070.1 - [+] show detail - Pre-mRNA-processing-splicing factor
    Distance: -503; Region: promoter
Flanking Genome Sequence: 12-1005-1 - 3-prime edge
```
TCAACAGTCA CCTGAAGGCT GAAGAAGAAG AGCAAAGAGA GCAGAATCTT 
GTCGGTGAAA ATCCGGGAGA ATCGGCAATG CGAGAAGAGC ATAGTCCGGT 
TAGGGACGGT CGTCGAAGTG GAGGACTGAG GTCGTTGATA GATCCACGCN 
TTCTTGTCAT CGTTTGCTTT AAACGACGGT GGTTCGATTT CTGGACGGAG 
ATCTTCCTAC CTGAAACTTC CTCCTCAGGG TCGTATCAAG CT
```

AT1G80060.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G32270.1); Has 129 Blast hits to 129 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80070.1

Model type: Protein coding
Short Description: Pre-mRNA-processing-splicing factor
Curator Summary: a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality.
Computational Description: ABNORMAL SUSPENSOR 2 (SUS2); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), PROCN (InterPro:IPR012592), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT4G38780.1); Has 828 Blast hits to 729 proteins in 312 species: Archae - 0; Bacteria - 2; Metazoa - 333; Fungi - 220; Plants - 69; Viruses - 2; Other Eukaryotes - 202 (source: NCBI BLink).
Link: InterPro Scan - TAIR