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12-1037-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3225973 [Map]; Strand: c
      • AT5G10270.1 - [+] show detail - cyclin-dependent kinase C;1
        Distance: -1208; Region: intergenic
      • AT5G10278.2 - [+] show detail - other RNA
        Distance: -2268; Region: intergenic
    Flanking Genome Sequence: 12-1037-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACATATATAG GCTTTTTCTT CTTAGTTTTA TGAACTTACT ATATATATAG
    GGAATCTGAC TGATGGAAGT TTCAAAATGA ACTAATGATA AAATAATGTT
    AAGACTATAT ATAAACAATG TTCTCATCCA ATCCACTGTC TGTAGAAGAA
    ATTGACNTTG CATATTTGGT TCATATTCCA CAATGGGGTT GAGATATGAT
    CCTACTTACT GATTTTTCTG TCTGATGGTG TANTTTTCAN NCTAACCAAA
    ACATTCCTCT TCCAAGCTAC TTTCTTCTGG GGGATGATGA CTNCGCTAGT
    GGAGCTNGTC CTACCATCCT NCTACTATNN CTNGTGATNT TNAGNNGATN
    TNNNNATNNC NNNNNCTTTN NNAA

AT5G10270.1

Model type
Protein coding
Short Description
cyclin-dependent kinase C;1
Curator Summary
Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development.
Computational Description
cyclin-dependent kinase C;1 (CDKC;1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to virus, leaf development; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin dependent kinase group C2 (TAIR:AT5G64960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10278.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR