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12-1079-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8945738 [Map]; Strand: w
      • AT2G20760.1 - [+] show detail - Clathrin light chain protein
        Distance: -494; Region: promoter
      • AT2G20770.1 - [+] show detail - GCR2-like 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-1079-1 - 5-prime edge 
    CTCTTTACTC TGGAACTCTT GGGGCTGCGT TTCTACTCTT TAGAGCTTAT 
    CAGGTTACTG GCAACGCCAA CGATCTTTCC CTCTGCTTGG AAATCGTCAA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8945622 [Map]; Strand: w
      • AT2G20760.1 - [+] show detail - Clathrin light chain protein
        Distance: -378; Region: promoter
      • AT2G20770.1 - [+] show detail - GCR2-like 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-1079-1 - 3-prime edge 
    GTAAAGAGTG AAGTCTTCAA CAGTCTGTCC ACTAAAACCC CAAGTTTCAA 
    TCACTACCTG AGAGATACCA ACAATAACAA CTTAGTGACC ATTTCAGAGT 
    AACCTAACCA ATCACAAGGA AGAAGAGTAG ATTTGCGCNT TACGGTTTCT 
    TTGAGATCCA AAGCGGACCG CTTGAGCTGC TGCGAGAGAG ACGAATACGG 
    CATAGCAAGC AGATTCCTAA GCGTATCTCC TCCAGATACA CTTTCCTTCT 
    CCTTCACGAA ATCAGGCATC ACGTTATCGA AGAACCGACC CGCCATTGTC 
    GTCTCTTTCC GTTAAAGCTC AAAATCGATT TTGTTTTCTA GAAGAAAGAC 
    TAAACGACAG CGTTTTTAGA CGACCGGTTC GGTGAGTTGG TTACACGTTT 
    TTGGTCAACG TGGCATTTTT TTTAATGAAA TCATCAGATC

AT2G20760.1

Model type
Protein coding
Short Description
Clathrin light chain protein
Computational Description
Clathrin light chain protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: Clathrin light chain protein (TAIR:AT2G40060.1); Has 1791 Blast hits to 1279 proteins in 282 species: Archae - 0; Bacteria - 563; Metazoa - 557; Fungi - 96; Plants - 161; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20770.1

Model type
Protein coding
Short Description
GCR2-like 2
Curator Summary
Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.
Computational Description
GCR2-like 2 (GCL2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: LanC-like protein, eukaryotic (InterPro:IPR020464), Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: G protein coupled receptor (TAIR:AT1G52920.1); Has 689 Blast hits to 684 proteins in 212 species: Archae - 0; Bacteria - 201; Metazoa - 271; Fungi - 68; Plants - 112; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR