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12-1082-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7722246 [Map]; Strand: w
      • AT1G21945.1 - [+] show detail - transposable element gene
        Distance: 126; Region: intergenic
      • AT1G21950.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1013; Region: intergenic
    Flanking Genome Sequence: 12-1082-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG ACCGTTCAAT CTACGAAGCT CTTCACGTCC 
    CTCGTCACGA TTCTCTTCAC GTGGCTCAAC AACTCCTTCC ATGGCGAGAG 
    ATTCTTGCAG GAGAAAAGAA AAACAAGATT TGAGACGAAG ATTGTGAAAA 
    TGAAAACAGA TTCGGGAGAG AAAATCTATA TAATAAGGGT TTTTGGAGTT 
    TATAAGCATA AAATGTTTCT TTTATTTAAA CTAACCACGG TTAAAGTTTG 
    ACCGGGGACC ATGGTTATAG TAATCGTACG TTTTTGTAAT CGGGACGTGA 
    GTGGTGATGA CTGATGACTG ATGACCTGGA AGGCTGGAAA GGACCTGACC 
    TCTTTGGTTA CACAATTTTC AGTCGTTGCT GAACCGGATA TCAATACTTT 
    TGGTTAGACA AATTGGAAAA AGATATCGGA ATGGTTTAGT AAATCGTTTG 
    ATATAGTAAC TATACATCAC AAATTCAGAC TATATTTGTA ATTGATTTTA 
    GAATATTAGT ACTCTTTTGT TTTTACTGAT TGTCTTTTAT CACATTTCTA 
    ACATTGAGAG GTCAAATAGG CTTCAGAATT TCCCATAATC CCCATTTAGT 
    CATTTTTACC AAACAAAACT TAAAGCAATT GCCTCATCTC ATGACATGTG 
    GAACGAAAAA TTTTATCGGA TGGTTAAAAT AANACACGAC TATTTTGNCT 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7717050 [Map]; Strand: w
      • AT1G21940.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -75; Region: promoter
      • AT1G21945.1 - [+] show detail - transposable element gene
        Distance: -776; Region: promoter
    Flanking Genome Sequence: 12-1082-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TTGTCGTCGC AGTGTTGCTT GAACTGTCCA CAAGAGTCTG CAAAAGAGCA 
    GCTGCTGGCT CAGATCCAAA CCCGACGATG ACCGGACACG TGGCAGTATT 
    CTTGGGCGAT AGAGTTCAAC TTGTGGGCAG CATCTTGCTT TTACGCTTGT 
    GATTCTCAAA ATCATTGTTG CTCCGATGGT GGTGGAACTG GAACGGTTGA 
    GAAAAGTACG AGAAGAGTGC GACGTGCAGC TGCTCGTGGG TTTGATTTTT 
    GTCGTCCTCA CGATTGCTTT CTTAGCGTAC CTTCGCTGCT TCGTCACCGG 
    GTGAGTGGTG TGTCTTGAGT TTTCTTCCAT CGTCACCGGA AATCAGTGAG 
    ACCATCGACG ATGCTTACAT GATGATCTCT CTTTCTATCT ACTTTTCGTT 
    TTCTTTGTTT CTTTGGGTTT GTTGTTTTGA ACATTATGGT TTCTTGATAA 
    AAGGTTTAAA CAAGAGTTTC TGAATATTAA TTGATATTGT AGTTACAACC 
    TTGCAATATT TATCACTTNA TACTGTATTT TGCATAGATA AAAATGCGTT 
    GAAGTTTCAG ATCGCATCCC TGANTACANT AATTANTTTT NCAAANAANT 
    CGANTGTGTG TGTGAACCGT TTNTGGTATC AGATTAAGAA CAATTCACTT 
    CCATGGTGCT TNGATGANTA GNTNCAAATT TTNCCTCAAA ATTGTTTANA 
    NGGAATANAG CTGCN

AT1G21940.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21950.1); Has 19 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21945.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-243 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G21950.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21940.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR