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Mutant Lines
12-1197-1

12-1197-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 19397922 [Map]; Strand: w
- AT2G47240.2 - [+] show detail - AMP-dependent synthetase and ligase family protein
  Distance: 91; Region: intergenic
- AT2G47250.1 - [+] show detail - RNA helicase family protein
  Distance: 1772; Region: intergenic

CAACAATAAA CAAATCAACA ACGAAAACCA AAATGTATTT TCATATTTTT 
CTCAACATAA TTTAATATCA CTTCTGAGTT TTTTTTCTAG ACTTTATATG 
AATCAAATTC ATAGAACGGG TTATTGGATA GTAAGTTAAA TCGTAGTGGT 
AGTTACNGTG GATTTTGGTA GATTATGGAT ACAAATAGAG AGTTACATTA 
CAAAAGCAAA AATCAAAAGA AAAAAAAAAN CCNTAATTAT GANGTAAANG 
TCNTCCANCN TAAAAATAAA ATNTTNCNTA ANGCNTAANG CNCATNTCTA 
TNAATTATNG ATCCNTNTAN CGTNCNTNTN TANCTNTCAA TANCAGCCCN 
CNCNTCATCG CAATACTTTC AAATTTTNTT TGNGGCCAAT TNGCGGNNCN 
TTTCGNCNAT TNGCCCCNGT NTAANGGANC GTTANCGGAT AAAANGGCTG 
CAAATNTCTA AATNCANCAT TTNCTNTNTN TAAGGGAAAT ANTAAAAACC 
CTANTCTNTA AAATTAAACC NGATAATNTT TGANAAAATT GTTCCNCCGA 
TTCTNGANCG TCGCAGCCAC TAAAGTNTCT CTNTACGTCA AAAGGTTTTG 
TCTCCNCTGC CNCCGNTTTG NTGTACNCAA ACTTTCTTAG CTNTNTTTCN 
CCATCCCTGA ATTTTTCTTT TAGTATTTAT TTAAAAATAA AATGGNGAAT 
TTTGATTAAA CNANGTCAAA NAACCTTGTC TTTTTTGCCG GGGACT

AT2G47240.2

Model type: Protein coding
Short Description: AMP-dependent synthetase and ligase family protein
Curator Summary: Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis
Computational Description: LONG-CHAIN ACYL-COA SYNTHASE 1 (LACS1); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid biosynthetic process, cutin biosynthetic process, wax biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G23850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47250.1

Model type: Protein coding
Short Description: RNA helicase family protein
Computational Description: RNA helicase family protein; FUNCTIONS IN: in 7 functions; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT3G62310.1); Has 10530 Blast hits to 9574 proteins in 1628 species: Archae - 0; Bacteria - 3453; Metazoa - 2465; Fungi - 1286; Plants - 884; Viruses - 707; Other Eukaryotes - 1735 (source: NCBI BLink).
Link: InterPro Scan - TAIR