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12-1313-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2168747 [Map]; Strand: w
      • AT1G07060.1 - [+] show detail - unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; ...
        Distance: -350; Region: promoter
      • AT1G07070.1 - [+] show detail - Ribosomal protein L35Ae family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-1313-1 - 5-prime edge 
    CGTGTCAGGT TGGTTATTCA TCTTCTATGT TCTCTAATTC TGTATCTGCT 
    AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2168631 [Map]; Strand: w
      • AT1G07060.1 - [+] show detail - unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; ...
        Distance: -234; Region: promoter
      • AT1G07070.1 - [+] show detail - Ribosomal protein L35Ae family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-1313-1 - 3-prime edge 
    CTGACACGTT CTCCTTGGCG TCCTTTCACC ATTTTTGTCG AATCGTCCGG 
    TGGAAGAAAT TAGCAGTTGT CTTCAGAAAA CGGAGACGAA AACTCAAAAA 
    AAACCTAATA AGCGAATCCT TATCAGTCGC GGAGGTAATT AGATGGCAAG 
    TAAACGTCAT CGATTTGATA TTAATGGGCC TATAAATCTA CATATGGGCC 
    GAATGTCAAC TCGTCAGGCT ATCGGCCCCT TGCTTATGTT GTCCTTAAAT 
    GAGTTCTTAT AATGCGCCGT CAAAATTAAC AATTAAGATG CGCCATAACA 
    TAAAATTCAA ATCAAAGGGC ACATTGAAAA TTCGAAACAC CGCTCAAATT 
    TCTCTCTGGA AAAAATGTTC AGATTCGATG ATCGCTGATC AGACTTACCT 
    CTTTATCAAT CGGGTCCAAG ACAGAAGGTT CTTCAATCCA TCCGAAGCAT 
    CTGATTCTCA ATTTCTCTTG TGTGTGTGGC TANAACAGGG TTTCTTCTCA 
    CTGATTGTGC AGGTTCGATG AANAATCTCT TCNGATTCTC GAGTTGTCTC 
    TGGTTGCAAT GAATGTGAAA TCGATTTTTG GAAGTTAGAT CTCGATTGAG 
    AGATTTCATG ANATCTGAAT CGGTTGTTAT ATTCGGNGAG CTCACCGGAN 
    AATCCTGGTC GCAAAACTCT CCNNNCTTGA ATTANNANCC CGGGNCGNCN 
    ACCNCC

AT1G07060.1

Model type
Protein coding
Computational Description
unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07070.1

Model type
Protein coding
Short Description
Ribosomal protein L35Ae family protein
Computational Description
Ribosomal protein L35Ae family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: Ribosomal protein L35Ae family protein (TAIR:AT1G74270.1); Has 767 Blast hits to 767 proteins in 257 species: Archae - 25; Bacteria - 0; Metazoa - 324; Fungi - 146; Plants - 149; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link
InterPro Scan - TAIR