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12-1339-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 148912 [Map]; Strand: w
      • AT4G00340.1 - [+] show detail - receptor-like protein kinase 4
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-1339-1 - 3-prime edge 
    ATGGCATTGG GTACTCTCGG GTGGGTTAAT GTTTGGTTGG TGGTGTTGAT 
    GATATTTTCT CGGTGGTGAT ACTGATAGAC ATGGGAAAGA AAGAACAAAA 
    GCTCTCTTTA ACTATTAGAC GTTTGAAATG TGGAGAGAAT TTTTGCAAGA 
    TAAAATCTGT AAAAGCTGTG ACTTCATACC TCCAAAAAGT AAATTCATTC 
    AGAAAAAGGT TTTGGAACTA TAGTTCCTAA CGCCAAAGTT ACTATATTAA 
    CCCTCATTCA TCAACACCGG CAGGATAGGA ACTAAAAGAA AGAGAAGGGC 
    AGAATAGGAA TTGAGAAGAG GGAGGTGGCA GTGGCAGACA TAAGTGGCTA 
    GAAGTCAAAG CCATGACATC TTTTTTCTCT TCTTCTTAAA TGATTCCTAA 
    CCTTTTTCTT AATTATTTCT AATTAATTAC TTTATGCAGC AGACAAAAGG 
    TGTTAATCAA AGAATCATTT TCTTTTTAAT ATCTTACACA CGACAAGACT 
    AGTCGCATGT GGATCAATTT ACTATTTGGA ATATTCATTT TCTCTTTAGA 
    CTATGGAATT ATACTATATC CATATCTAAT AGAATCTCTC TCTTTCTTTA 
    ACCAAACAAA CAAACAAACA AAATCATGCT TATTATGATT CCCAGATCAG 
    GGCATTAACC AATATTGCTA AGATAGAATC ATGGATCAAG ACAAGAGTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 149028 [Map]; Strand: w
      • AT4G00340.1 - [+] show detail - receptor-like protein kinase 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-1339-1 - 5-prime edge 
    AATGCCATGT ACTACTTATC TTCTTCTTCT CCTCTTCCTT CTTCCACCAC 
    CATCTGTACA AAGCAAAGTT ATCATCAAAG GAAACCAAAC CATTCTGAGT 
    TTCAAAGCTA TTTTCCGGCT TGGTTTCTTC AGCACCACCA ATGGTTCCTC 
    CAATTGGTAC TTGGGTATCT CTTACGCTTC TATGCCAACT CCCACCCACG 
    TTTGGGTCGC CAATCGAATC CGACCCGTTT CGGATC

AT4G00340.1

Model type
Protein coding
Short Description
receptor-like protein kinase 4
Curator Summary
Encodes a receptor-like protein kinase that is expressed in roots.
Computational Description
receptor-like protein kinase 4 (RLK4); FUNCTIONS IN: sugar binding, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1); Has 118915 Blast hits to 117390 proteins in 4385 species: Archae - 97; Bacteria - 13085; Metazoa - 43904; Fungi - 9417; Plants - 35014; Viruses - 433; Other Eukaryotes - 16965 (source: NCBI BLink).
Link
InterPro Scan - TAIR