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12-1446-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22752773 [Map]; Strand: w
      • AT1G61650.1 - [+] show detail - pseudogene, similar to chromomethylase-like protein, blastp match of 45% iden...
        Distance: -1211; Region: intergenic
      • AT1G61660.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 942; Region: intergenic
    Flanking Genome Sequence: 12-1446-1 - 3-prime edge 
    GAGAGAAGTT AAGAGTTGGT TGCTACTCAT ATTCGGCTAA ATCCTTTGTC 
    TCATGATCAA CAAAAGTTAC CGTCCTACGT AGATTTTTTG GATTCATGAG 
    GTGCTTCGGC TCTTGTCATT GGTTTAATAT GTAACNTTGG ATTCATGTAA 
    AAATATGTTG CTAAGTTTGT GAATCTAGTG ACATCGGTCC CTCTTCTAGT 
    CTTCTTAAAT CTTAACCAAC AAATTAGAGA AAATGGTCGA TTACAACTAT 
    ATATGTGGTG GCTCATATAA ATTTATCGTA CCTAACAAAT AAAAATCTTC 
    GACATAAACA ACATATAACT AGTCTAAAAT ATTGGATATT ATATGAGAAA 
    GCTAAGATAG CATAAACTTG AATACATGTC AAATCAAATT TAACTTCTAC 
    CTGAAAATTC GATTCACTAG TTTCAACTGT AGATCGATTA GAATCAATGT 
    TGTAATAGAG TTTGACAAAA TATGCCATGC GCCAAAAGAA AGGAGGATCA 
    TGTATAATGT AATATGAATA TAAAAGGCAA AAGAAAACAT TATGAGCATA 
    AATATTTAGT CTTTTAGATG TACAATAAAG GACGAACAAG TTTCCTCTTT 
    TTTGCTTTAT GTGAATACAA CAAGTTCTTA ATATCTTCAG CTATAAGCTA 
    CCANCCCGGG GCCGTNGACC ACCNGNNCCC TNTA

AT1G61650.1

Model type
Pseudogene
Computational Description
pseudogene, similar to chromomethylase-like protein, blastp match of 45% identity and 3.0e-24 P-value to GP|27529842|dbj|BAC53936.1||AB032538 chromomethylase-like protein {Nicotiana tabacum}
Link
InterPro Scan - TAIR

AT1G61660.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G20640.1); Has 1502 Blast hits to 1260 proteins in 110 species: Archae - 0; Bacteria - 97; Metazoa - 123; Fungi - 48; Plants - 982; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).
Link
InterPro Scan - TAIR