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12-1561-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9915741 [Map]; Strand: w
      • AT5G27900.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-1561-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCNT 
    TAGTGACTGG GGCAACAAGC ATTGTACAAG TTTCTGGCGC ACAACGATAG 
    TCCATNAGAT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22549604 [Map]; Strand: w
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G60965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-1561-1 - 5-prime edge 
    CCTNTNGNGA AGNAANAGGA CGTTGAANNG ANANCCGTAC AGNTNANGAA 
    NTNTACNGAG AGTACATGNC GAATCNANNG NNAACGANNC GNNNGNNGTG 
    GACGCNCATC ATNTGNNCGN NTTTATGGAC ATANATNGTN AANCTTATAG 
    NNGAANTTTC GGTAAAACGA NANCAGGGAC TTGGCNANGG ACNCANNCAT 
    ACGATCACAT NAATCCCTGA CACAGCACTA GTTACTACCT ACTTAATTAG 
    CTCCAAATTT CNGAAAGAAA AGNCCNANCT TCTNGGANAA GGGTGACCCN 
    TTCTTTTNTG CCACAAANCC CCANCATNCA CTGNCCCNAC ACGATTCACT 
    TGAGGAATAA CCGCTTCCGC ANGATGATAA ACCCCNTCAC GTCCAGTCCC 
    CANTCCAATC AAANCCCTCN AAGCTTGGNC CTGTATNACA CAAAACTTGG 
    NANTAAAAAT GACAGTGCCT NGCNATGTCA CGCAAGAGTT GTGATACAGA 
    TATAAGTGTA ATTGACAATT CTGAAGCATA AAACACGTGA TGAAGTATGA 
    GCTTTCCACC AAGGATAAGT GTGCCATATC TTGTTGCCCA AGTGATCTTG 
    TCATTTGGCA ATTTGATAGG ACATAGATC

AT3G60961.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60965.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.8e-146 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT5G27900.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 2.1e-26 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR