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12-1662-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22702119 [Map]; Strand: c
      • AT1G61665.1 - [+] show detail - pseudogene, similar to serine/threonine kinase, blastp match of 55% identity ...
        Distance: -373; Region: promoter
      • AT1G61540.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -379; Region: promoter
    Flanking Genome Sequence: 12-1662-1 - 5-prime edge 
    TCAGCGGNAG TGACAAATCC TGATCACCGG AAACACTATT TTAGACCGGA 
    TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22702182 [Map]; Strand: c
      • AT1G61665.1 - [+] show detail - pseudogene, similar to serine/threonine kinase, blastp match of 55% identity ...
        Distance: -436; Region: promoter
      • AT1G61540.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -316; Region: promoter
    Flanking Genome Sequence: 12-1662-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    GTGCCCGCTG ACAATAATAT CTGATAGCTT TTCATATTAA CCCCTAAAGA 
    ATGTTTGATA TCCGATATTA ATCCCAAATT TTGTTTCATA CTATTTTCAT 
    CCACCAGATT CAGATCCATA TAAAAAGTTT TGTGACTCAT TTACCTAATT 
    CAAAAAACGT TTTCCGTAAG GCCCATTTAC ATGCTAACTT TGGGCCTATA 
    TGCCTAGGTT TTGGTCGATT TTTGAAATCA AGGAAACCCT TATTATTCCT 
    TCCTTGATAA AGAAGAATCT TCGTTATTGC CCTATTGACG TCCAAAGCCA 
    GATCTTCCAT ACGCCGCCAT GAACGGCGAA AAACCACTCC GTGAGAGGAA 
    GAAGAAGATG CCGTATCCTT CTCCGGTGAC AGAAGAACCA ATCTCTATCA 
    TGTCACTTCC TTATGACTTG TTATTGAACT GCTTCTCACT CGTCTCAAGG 
    TTGTATTATC CAACTCTCTC CCTCGTTTCC AAAACTTTTC GATCTATCAT 
    TACTTCACGC GAACTTTACG AGATCCGATC ACGCTTAAAC CGTACGGATA 
    AGTGTCTCTA TCTTTGCTTC CCTTACGACA TGAACACGCA TTGGTTCACT 
    CTCTGCCGGG CTCCTAATCG AAACGTTGCC GAGAATT

AT1G61540.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39590.1); Has 1659 Blast hits to 1561 proteins in 111 species: Archae - 2; Bacteria - 82; Metazoa - 518; Fungi - 4; Plants - 1010; Viruses - 4; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61665.1

Model type
Pseudogene
Computational Description
pseudogene, similar to serine/threonine kinase, blastp match of 55% identity and 3.4e-14 P-value to GP|2181190|emb|CAA73134.1||Y12531 serine/threonine kinase {Brassica oleracea}
Link
InterPro Scan - TAIR