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12-1796-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15616517 [Map]; Strand: c
      • AT4G32342.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -317; Region: promoter
      • AT4G32350.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: -949; Region: promoter
    Flanking Genome Sequence: 12-1796-1 - 3-prime edge 
    CTTACAAGCA AGTAAGGCAT ATTATGCCGC ATAATTACAT ATTTTACCTT 
    GATTTAGTAC AAAGTCTGTC TCTGAACTGA AGCACATATA TACATCCACA 
    TGATTTAATA GAATCTTGAA AAGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15616437 [Map]; Strand: c
      • AT4G32342.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -237; Region: promoter
    Flanking Genome Sequence: 12-1796-1 - 5-prime edge 
    NGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGTTATAA 
    CATATGGATT CCTTTTGTGC TTAAATGCAT ATGTTTGCTT GTCATATGAG 
    GCATATTACT ACACTTCCTT GCTAATCTTT TTTGAGTTTC CTTAATTCTC 
    TTTCATGTTC ATTGTGCTTT TGTCCTGTCA TGTATTAGCT AGCTATGTGT 
    TCTTGTTATT CATTCTTGCT AAAATTACGA ACACAATTTA GTAAGAAGCG 
    TTGTTGCTCT TTCTTCCAAT TCCCGGCAGC TTACTTCCAA ACTCTCCCTT 
    TTTGGCTAAT GGAATCTCTA CGATCAAATT GCAAAACTCT CATCAATGTG 
    AGCGACCCGG AGAACCAAAT TGATTTCTTT CCAAGTAGAT CAAACATATT 
    AGACCATAGT AACAAATGAT TGACATAATG TTCAATCTTT CANAGCATAA 
    ACTGTTTCGG ATGCTGCAAC AGAGAAAGGC GTTTAGTTGT GGAAGTCGAT 
    GAGCCATCAA AGGGACTCAA AATCCAAGGA AAGATAGTGA AGAAAGATAG 
    TGCTTCATCA GATGACTTCT GGAGCACAAG TACGTGTGAT ATGGACCACA 
    ATATAACGAT TCAGTCCCAA TCTTCAAACC CGCCTTTTGA TCCCCAATGC 
    AGCACAAGCA NCTCTACCGA ATTNGNAAAC CATGGGAACC TTTGGAATGN 
    TCTAACNTCT AAGGCCTAGG TGGTTTNGGA TGCCAAAAAC NTANGNTNTG 
    AANCAAGNAN NNTTTNTTAC TNNTNCNNT

AT4G32342.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32350.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G79910.1); Has 2836 Blast hits to 2289 proteins in 246 species: Archae - 0; Bacteria - 95; Metazoa - 1034; Fungi - 145; Plants - 397; Viruses - 5; Other Eukaryotes - 1160 (source: NCBI BLink).
Link
InterPro Scan - TAIR