1. Home
  2. Mutant Lines
  3. 12-1864-1

12-1864-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 921626 [Map]; Strand: c
      • AT2G03090.1 - [+] show detail - expansin A15
        Distance: -2983; Region: intergenic
      • AT2G03100.1 - [+] show detail - transposable element gene
        Distance: 5183; Region: intergenic
    Flanking Genome Sequence: 12-1864-1 - 3-prime edge
    GAATCAGGTC CAATAATTGG AGAAAAGGTC ATCTACTAAT CATGATTAAG 
    CACATACTAT CACTTTTGTT TCACTCCTCG TGGAAACCGT AATGGTCAAA
    TTATAAGACC ATTCATTAAA AAACAAAGTA ATCTAAGTTA ATCAATGACA
    ATAACATAAT ACACGTTATT TTTCGTTATG GCCTACCTCT ATATATTATG
    TGATTATATT TTCTCAAGAA ATCTTATGGC TTAATTTGTT TTCAACTAAT
    CGCATCAGTG TTTCTAATTG AGTTCATATT TATATTTGTT TGTCATTAAC
    ATATTAGTAT TATCAATTAT AATGTGAATT TCACCATTAC GTTTACAGTT
    TGAACATGTT TTTTTCTTAG ACTAAGTACA AAATACAANT ACAATGTTTG
    AAATAATCAA CATCTTTATT ATATTTTTTA TTTTGAAGTT CATTTTTCTA
    ATCCATCCAC TAAAATTTGC TCTAACTTTT TATTGTGGTG CCTCACGTAA
    AAATAATTTA ATGTCGTCAT GTTCTTGTTT TAACATTACT TATGTTTTTA
    AAATTCTTCT CTCGGGATAC TTGGTATGAG ATTCGTGAGT CCAGTCCAAC
    GTGTGAATGG TTCAAGGGAG TATGGTTTCA AAACTCCACT CCTAAACACT
    CATTCATGTT TTGGTTAGCC ATTCGAAACC GTCTAGCTAC GGGGGACAGA
    TTATTAAAGT GAATGGCGAC NCTTATGGGG GGTGTGGGCT N

AT2G03090.1

Model type
Protein coding
Short Description
expansin A15
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.2e-225 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR