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12-1970-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17554489 [Map]; Strand: c
      • AT1G47705.1 - [+] show detail - pseudogene, similar to peroxidase 6, similar to peroxidase GB:P00434 GI:46436...
        Distance: -3765; Region: intergenic
      • AT1G47710.1 - [+] show detail - Serine protease inhibitor (SERPIN) family protein
        Distance: -3720; Region: intergenic
    Flanking Genome Sequence: 12-1970-1 - 5-prime edge 
    ATCACAACCT TCCCCACTTT CTCAATAAAG TTGAGTAGTG TAAGGGCATA 
    TTCTTCCCTT GTGTTTTCTC TTGAGATGTC GAGCAGAAGC CAGCGGAAAT 
    CGAGTAAAAT AGTGGTACCA AATTTGTCGT GGTCGAGCTG AGCATCTAAT 
    AGTGGTAGTA CTAGAGAATC AAGAACCCGA AGCTGTTATG GAGTTCGGGT 
    AGTAGAGAAT CAAGTATATT TATTTTATAT TATGACCCTC GTAAAATTAT 
    GGACTAAATT ATAAAATATT TTAGAAAATT TGACTACCAT TAATGTTATA 
    TCTCATTTGT AGTTATACAT TATGATTATT TCTTTTGAGA AAAAATATTA 
    CTTTTGAAAA TAACATAGTC CACTATTTTA AAAAGTCCAA CTGCGATTAA 
    GAAGCT

AT1G47705.1

Model type
Pseudogene
Computational Description
pseudogene, similar to peroxidase 6, similar to peroxidase GB:P00434 GI:464365 from (Brassica rapa); blastp match of 60% identity and 7.0e-14 P-value to GP|5002334|gb|AAD37423.1|AF149281_1|AF149281 peroxidase 6 {Phaseolus vulgaris}
Link
InterPro Scan - TAIR

AT1G47710.1

Model type
Protein coding
Short Description
Serine protease inhibitor (SERPIN) family protein
Computational Description
Serine protease inhibitor (SERPIN) family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT3G45220.1); Has 6643 Blast hits to 6565 proteins in 500 species: Archae - 66; Bacteria - 387; Metazoa - 5142; Fungi - 12; Plants - 353; Viruses - 463; Other Eukaryotes - 220 (source: NCBI BLink).
Link
InterPro Scan - TAIR