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12-1971-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seedling (PO:0008037)
  • abnormal (PATO:0000460)
    (Seedling::abnormal shape)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26104932 [Map]; Strand: c
      • AT1G69440.1 - [+] show detail - Argonaute family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-1971-1 - 5-prime edge 
    AAATTCATCA TCATCACAGT ACCAACAAAC ACATCCCTAG TTCCAAATCA 
    AGAACACCTC TTCTCCACAA GCCTTATCAT CACCATGTTC AAACCAATCC 
    TCCTCCTTTT CTTTTGCACC CTTCTTCTCA CCAAAACCTC AATCTTGTTG 
    CCTCAAATCT TCCTTCTAGC TACTACTACT ATTACTACTG CTACTTCTAC 
    TCTCAATTGC ACAACTCTCT TCCTCCTCCT CCTCCTCCTC ATCTTCTTCC 
    TCTTTCTCCT CCTCTTCCTC CTTTACTTCC TCTTCCTCCT CCTCACTCAA 
    TGACCCGTTT CCACAAATCT CTCCCTGTTT CTCAAGGTGA CTACTAATCT 
    ACCTTTTTCT TCTTCTTGGT TTATTCTTTG CATGTTTGGT CTAAAGGTTT 
    AGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26104994 [Map]; Strand: c
      • AT1G69440.1 - [+] show detail - Argonaute family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-1971-1 - 3-prime edge 
    AAATGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATG 
    ATTGATGATG AGTTTTTTCT TCCATGGCTG CTGAGAGGAA AAGGAGCTAC 
    AGAGAGAGAC CTTTGTTGGC TTTGGAAAGC T

AT1G69440.1

Model type
Protein coding
Short Description
Argonaute family protein
Curator Summary
Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds.
Computational Description
ARGONAUTE7 (AGO7); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: production of ta-siRNAs involved in RNA interference, vegetative phase change, production of lsiRNA involved in RNA interference, regulation of development, heterochronic, gene silencing by miRNA; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT1G48410.1); Has 2067 Blast hits to 2008 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1082; Fungi - 299; Plants - 502; Viruses - 5; Other Eukaryotes - 179 (source: NCBI BLink).
Link
InterPro Scan - TAIR