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12-1982-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30082788 [Map]; Strand: w
      • AT1G79970.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
      • AT1G79970.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-1982-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAG TGATTCAGAT TCGTCTGATG AGTCTTTGAA 
    ACACAATAGC ACCCCACCAC TCTTTAGCAT CTCTGGCTTC TTTTGTGTTG 
    CCAAAGGAGG AGACTCTGAT CCCGGTAGGA GCCCTACTTC TCCCCTTGAT 
    TTTGGAGTCT TTGGTGGCCT CTTTAGCCCC AGGTCTTCTT CTTCTTCACC 
    CCTCCACCGA AACAAATGGC TTTCTCACAA AGTCGGGCTT TCTCTTCTGA 
    GCTCCAGCTT CGAACTAGGC GATGATCCAT TCAGAAGGGA CTACATTGTG 
    CTTGCCCCTC AGGTCAAGGT CAACAATGTT AATACAGCAA CTCCCAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30082785 [Map]; Strand: w
      • AT1G79970.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
      • AT1G79970.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-1982-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    GCTTGCCTCA CCCATTTTTA TTATTAGTTG ACCAACCAAA TTATGATTCC 
    TTTCACCTGG GTGGATGATT CACGGAAACT CATTCCTACA AAAATACACA 
    AATTAATATT TTACCTTTTT CTGGTTTCAG TAGCAATTTA TAAAAATCTT 
    GTGTTATATA ATAATGTATG CTTCATTCAA TCAATCAATC CAACATTGAT 
    ACTCTCTACC AATAATCTCT GATCTACAAA ACTACCGAAT T

AT1G79970.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79970.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR