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Mutant Lines
12-2003-1

12-2003-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 506085 [Map]; Strand: w
  - AT3G02450.1 - [+] show detail - cell division protein ftsH, putative
    Distance: -855; Region: promoter
  - AT3G02460.1 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
    Distance: 0; Region: exon2 (5UTR)
  - AT3G02460.2 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
    Distance: 0; Region: exon2 (5UTR)
Flanking Genome Sequence: 12-2003-1 - 5-prime edge
```
NNNNNNGNAT NANNNAGGGC TTGATTGTGT CATTNGGGAG CTTGATCNCA 
NCGAGACTGA AGCCNANGNN ACGAGGANNC TNTNCAGGTN ACNAGAATGA 
NTANAAAAAG AACGGAAAAT GGCAGTGAAT CAGGACCAGC CACTTCTCAT 
GTTCCTGTGG ATAGATTCGG GTTTCTCAAG CAAGAACATG CCAATTCGCC 
TGAGCGTTTT AGCAAGTCTA AAACTACATC ATCCACTGAT CATGACAGGT 
ATGTCCTGAG GGAGCGAATA ATTTTAAAAG AATATGATTG AGAGAGTGAG 
AGTGTGTTTT TGTTGTTGGC TATCTATANA GAGGAGAGAA AGGNGAGAAA 
ATGGAGGAAG ATGATNGGGG NNGGAGGGAG NGA
```
3 prime edge [+] show sequence
1. Chromosome: 3; Position: 505969 [Map]; Strand: w
  - AT3G02450.1 - [+] show detail - cell division protein ftsH, putative
    Distance: -739; Region: promoter
  - AT3G02460.1 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
    Distance: 0; Region: intron1 (5UTR)
  - AT3G02460.2 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
    Distance: 0; Region: intron1 (5UTR)
Flanking Genome Sequence: 12-2003-1 - 3-prime edge
```
CCCAATAGTG AAATTTATAC CATCAAAGTA TAAACAGGTT CTCAAAGTAA 
AATCCTAAAT CTAGTAACGT CGATCGTCCA AAAACTGTAA CCAGTAATCA 
TAATCAGCAG AAACGTGATC GTAAAAAATC CAGGAGAAAT TAAAACTCAC 
CTAGGTTTAG TCAGATCAAA AGATTCGTAA CCAAATTCCT CGATGAGAAT 
TGTTGGAATT
```

AT3G02450.1

Model type: Protein coding
Short Description: cell division protein ftsH, putative
Computational Description: cell division protein ftsH, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 43920 Blast hits to 41347 proteins in 3350 species: Archae - 1585; Bacteria - 19560; Metazoa - 4991; Fungi - 3838; Plants - 3354; Viruses - 31; Other Eukaryotes - 10561 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02460.1

Model type: Protein coding
Short Description: Ypt/Rab-GAP domain of gyp1p superfamily protein
Computational Description: Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: plant adhesion molecule 1 (TAIR:AT5G15930.1); Has 5276 Blast hits to 5263 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2708; Fungi - 1087; Plants - 526; Viruses - 0; Other Eukaryotes - 955 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02460.2

Model type: Protein coding
Short Description: Ypt/Rab-GAP domain of gyp1p superfamily protein
Computational Description: Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: plant adhesion molecule 1 (TAIR:AT5G15930.1); Has 4815 Blast hits to 4807 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2496; Fungi - 964; Plants - 519; Viruses - 0; Other Eukaryotes - 836 (source: NCBI BLink).
Link: InterPro Scan - TAIR