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12-2090-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30190223 [Map]; Strand: c
      • AT1G80290.2 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 649; Region: intergenic
      • AT1G80300.1 - [+] show detail - nucleotide transporter 1
        Distance: -1633; Region: intergenic
    Flanking Genome Sequence: 12-2090-1 - 5-prime edge
    AGTACTAGTA ACCCTTTTTA ACAACGCAAC GGTACCGATA TCTTCCACGT 
    GGCCAATAGT AAACGGTTCT AGAGATGTAA ATAAGGAGGC ACTTTTGCTC
    AGACACATAA TGACAGAATC GTGTTATAGA GAGAAACGGT GTTTTATTGA
    GACACGTCAC ACACCTTCTC TTTACCTGCG GCTGTGACAG CTGCCTGCAT
    CTTTCCCGTA TTTTTCAGAT ATTTCTCTCT TTTTCTTTTT TTCTCGTAAA
    CTAAAAATCC TCCGACGGCT CCGCCTTTGC CACGCCATTT TTGAACTTAT
    TATTAAGCT

AT1G80290.2

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
a member of the Glycosyltransferase Family 64 (according to CAZy Database)
Computational Description
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 640 Blast hits to 640 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 8; Plants - 102; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80300.1

Model type
Protein coding
Short Description
nucleotide transporter 1
Computational Description
nucleotide transporter 1 (NTT1); FUNCTIONS IN: ATP:ADP antiporter activity; INVOLVED IN: transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: stem, root, guard cell, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ADP/ATP carrier protein (InterPro:IPR004667); BEST Arabidopsis thaliana protein match is: TLC ATP/ADP transporter (TAIR:AT1G15500.1); Has 784 Blast hits to 777 proteins in 180 species: Archae - 0; Bacteria - 480; Metazoa - 8; Fungi - 28; Plants - 103; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).
Link
InterPro Scan - TAIR