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12-2148-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78023 [Map]; Strand: w
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-2148-1 - 5-prime edge 
    CTCTCTCTCT TGTTGTGTAT AATTTCAACA CCGCTATTAC AGAAGAAGAG 
    TGAAAAGGGA GAGGGAGCTT CCTGCTTTCA CTTACTATGC CTCCTCCTCC 
    TTCTAGTTCT AGAGCAGGTC TCAACNGGCG ATCCGATTGC TGCTCAGAAC 
    CAGCAGCCGT ATTACCGGAG CTACTCATCG TCGTCGTCGG CGTCGCTGAA 
    GGGATGCTGC TGCTGCTTGT TCTTGCTGTT CGCGTTCCTG GCGCTGCTGG 
    TACTGGCGGT GGTGCTCATC GTAATACTGG CGGTGAAGCC GAAGAAGCCG 
    CAGTTCGATC TGCAGCAAGT GGCAGTGGTG TACATGGGGA TCTCCAACCC 
    AAGCGCTGTT CTGGATC

AT2G01080.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR