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12-2227-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19061166 [Map]; Strand: w
      • AT1G51410.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 12-2227-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CGTCTGATCT TTACCCTGAT TTTCAACTCC CTGAGAAGTT AGTGTTTCTT 
    TTTAGTGTCT CTTTTTTGTC TTTCTAGAAA TTGATAACTA AAAGAATCTT 
    TGAAAATAAT CAATTAAAAT TTTGTTGTAG GTGTGCAGAT GAAAAGATAT 
    ATATTCCAAC ATATAAAGTG TCTAAAGAGA AAGCAGAGTC TCTTGGGGTT 
    GAGTTTGTGC CATTGGAAGT TAGCATTAAA GAGACTGTAG AGAGCTTGAG 
    AGATAAAGGG TTCATCAGAT TTTGAGTTCT ATCCACAAAA CGAAAACTCA 
    AACCAGAACC AGACTTGGAT ATGTTTGTGT TTTACTCCCA AGTTTTTTTT 
    GTTTTTTTTN GTTTTTGGTT TTACTTAATT CAAATATGGA GNGGGNGGCC 
    TTNGATATTA TGAACATTNT TCCATCATCT TGGACNGANG GAATTAAATT 
    ATTATTATTT CCATTCGGAA TTTGTATTGG AANGAAGTTT CCTTTTNAAA 
    GNNGNNCAAN ATAAAAAAGC CAANNGNCAA NNNNNTNAAC NNNANCNATN 
    NNTTANNNTN NNCNAAANNN TNNGGGCCCC NNGNNNGNNC TNAANATTNN 
    TNNNANNANC NANNNNNNTN NNNAANCCNN NNNNNGCNNN GGGNGGGNNN 
    NNNNAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20034431 [Map]; Strand: w
      • AT1G53660.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-2227-1 - 3-prime edge 
    GAAATCTCTA CATAAGTAGT TGNCTTAGGC ACCAACCCAC AATCCAAGCT 
    GATGAATCCT GTTCATGATC AAAGCGAATA ATCATTTGTG TAATGGAAGT 
    ACATAACTNA CCATTGAACC ATACATTNGA ACCTACTGTN GNATTAACAA 
    GAATTTTATT ATTATTATAT TTCTNGTNCA AAACCAAATN GCATTGTAAC 
    AGAACTNTAC CAAGATTGTC AAAGGTAAAA GCT

AT1G51410.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G19440.1); Has 8402 Blast hits to 8385 proteins in 1446 species: Archae - 75; Bacteria - 2860; Metazoa - 268; Fungi - 933; Plants - 2492; Viruses - 10; Other Eukaryotes - 1764 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53660.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT3G14410.1); Has 2431 Blast hits to 2424 proteins in 266 species: Archae - 2; Bacteria - 61; Metazoa - 541; Fungi - 378; Plants - 1216; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).
Link
InterPro Scan - TAIR