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12-2398-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21931031 [Map]; Strand: w
      • AT5G54040.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -394; Region: promoter
    Flanking Genome Sequence: 12-2398-1 - 5-prime edge 
    CTCTACTATG ATTANGCGAN TCAGGGCCTA CAACNCTCAA NTAACCAAAG 
    TCTGNACGCC TTGTTCATNA ATNGCTANCG NAAATAAGNA NGTNCTCCCA 
    ANTNGANCTN ACTATACATA CTTTGCTATT TATTTTATCT TTGCTAAATA 
    ATATAATCAT CTACTACNTT GTTTGGTTTT CTTGACTTTC GCACAAATAA 
    TAAATAACTG ATGAATTGAT GATGACGATT TGCCTCATGT AAGATTCTTG 
    ACATTTTCGT AGATCAGTTA TATATCATAG CTGAATTTTT CTCCGACCAA 
    TGATTTTCCC TTGCTAACTC TATTTTGCCT TCTTCTTTTC GTATACGTAA 
    ACACTTTGAT TAGAGTTTTT TTTTTTTTTT TTTTNNAAAA AAAANGTNAA 
    ANNGGNTTCN NNAAAAAAAA AAAANTTTCC NNAAAAAANN NNGGGGGNTT 
    TTNNNNCCGG NAANTTNCCN AAAAAAACNT TTTTTNNAAA NNNNNNTNGG 
    GNCCTTTTNA AAAAAAAAAA ANNNTTTTTT TTTTNNGNAA AANNNAAAAN 
    TTTTTTTNNA NNAAAAANNT TTTTNAAAAN NNNNNNGAAA AANCNNNGGG 
    GGGGGNCCCC NGGNAAAAAA AAAAAAAAAA ANGGGGGGNA AAANAANCGN 
    GGGCCCTNGN AAAAAAAAAA NTTTNNCCCC CNCCCCNTTT TNGGGGGCCC 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21930925 [Map]; Strand: w
      • AT5G54040.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -288; Region: promoter
    Flanking Genome Sequence: 12-2398-1 - 3-prime edge 
    TAGTAGAGTG GCTAGAAAAG GTTATATATT GTAATTTTCT TTTATGATAT 
    ATACCTATCA AAATTTTCAA GAATCTTACG TGTAGTTTAG TTGAAGTTGC 
    CAAGAAACCC AAACAAGTAA ATATTTCGTA CAACCTTGTA AAGTTGCGTA 
    TATATATGTA TATATATAAT TTATATTAAT TAGCCGGCAG TGTCGGCCAT 
    CAATTACCAT TGGTACAAAG AAAATAAACT AAAAATTAAT TGATGAGTTC 
    CAAGGAAGTT AAGTACTACA TAATGAGGAG CTCACAGGAC AAAATTATAA 
    CTCAACTTCT GCTTTTTATT TTCTTCTTTG AATATACAAA AATGACTCCT 
    GATGATTTCC AACTAGCCAC CATGCCTAAA CTCACGGTTC CTTTTCATGA 
    TCATCCTATG TCAAGTTCTT ATTGTATTTT TTTGGAATCT TGCTCTTTGT 
    GCTCTTTCTC TAANAACTCT TCATGGCTAA GAANAAGTGT TACTTGTATC 
    AGTTACGAGT GTACGGATTG TGGCTTGACG TTGCACAAAG AATGCGTTGA 
    CCACCTCTTC CTCAACCGGC CATTTCTATG CAATCACGTT CTCAAGATCT 
    ACCGTAATAC CTTNNCGTGG CCTGACCCCT GACCGTAAGA CNACCTTCTT 
    GTNATTTTGT NNACNTAGCT T

AT5G54040.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G54050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR