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12-2593-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Fruits (Siliques)::others)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21583892 [Map]; Strand: c
      • AT5G53200.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-2593-1 - 3-prime edge 
    AGAGAGATAT TGGATAATGA GAAACAGTGA AGGCTTTGCT GATAAACGAC 
    GCCAGCTTCA CTCATCTTCC CACAAACATA CCAAGCCTCA CCGTCCTCGC 
    TTTTCTATCT ATCCTTCCTA GTGTTTTTGT TTTTAAGCCA ACGAAAAAAG 
    AAAATAAAAA AATTATAATA GATGTATAGT AGTGGTTCTT GTTAGTTTGA 
    AGAATT

AT5G53200.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
TRIPTYCHON (TRY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G30420.1); Has 2274 Blast hits to 2274 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2256; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR