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12-2642-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13469183 [Map]; Strand: w
      • AT5G35205.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-2642-1 - 3-prime edge 
    TTAAAGAGTA TGAAGCCTCA GCTTAGGCAT ATGGGGAAAA AACTACTTGG 
    AGACATATCG ATAAAAACAA AAGAGGCGTA CAAGAAGCTC TGCGAATTAC 
    AAACTGCAAC AATGATGGCT CCAACAACTC AATCTGTGCA TGCAGAGGCA 
    GTGGCATATG CGAGATGGCA GAGGATGTCT GAAATCGAAG AAAAATATCT 
    TCGACAGAAA GCAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13469239 [Map]; Strand: w
      • AT5G35205.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-2642-1 - 5-prime edge 
    GGNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCTTTGATAA CATAAACATT GCTGCTGTTG 
    AGTGGTGTAG CTGAGGCGTC TGTGCCCATA TCTCCTCGAT CGTTTCTTTA 
    TAATCTGCCA TGCTAGTTAA AGCATTCGTG AATTTGAATG GCCTCTTGAC 
    TTTTTTCTCT TGTTCCTTTA TATAGAACCT GCATTTTAGA TGATCCGAAC 
    AGCCCCCTGG TTCGAATACA GAGTATGATT GGTCATATTG TTGTAGCCAT 
    TGCCTACTCA CCAACACTCT ATCAAGTTTT TTGTAGATTA CTCCATCCTG 
    CCTCTTATTA CTCCACATGA ATCTTGGACC TTGGTAGCTC AGGTCTGTTA 
    ATTCACAGGA ATGAACCAAA TTTTGAAAAT CTCTCATACC CGGCGAGATG 
    GAGGGAGCTG ATTCATACAA AGAATGATCT TCTCCATCCA ACACTTCATT 
    AAAATCCCCA CAGATTANCC ATGCTTTACC TTGAAACAGA GGTGAATCAT 
    GATGATATTT AATGTCTTCC CAAAGTATTC TTCTATCTGC AACAAAGNTN 
    GATGCNTNNN TNAAAGATNC NAANAATACN NNNNNNGNNC NNNNANNNNN 
    CGG

AT5G35205.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-36 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR