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12-2774-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20507849 [Map]; Strand: c
      • AT1G54980.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-2774-1 - 5-prime edge 
    CATAGGGTCT TGCNCAAACA AAATTTTGAA TGATATAATG TCGTGAATTG 
    TTAAAAAGTT GTGGAAACAA TTTTCACAGC TTAACAAACA AAATAGATAT 
    ACTATTCCAA TTATATTTGT GACTCGTTCT TAGTATTAAA TATTTACCAA 
    TAACACATTG CAGTTTAAAA ATGATAATCT TTTAATCTAC AGCTCCCACT 
    TGCGGAAGTC GTGATCAGGG GCATTGACTT ACCCTATGCC AAGTTGTTGG 
    TGAAATCTGC AGATAGAGCA ATAGAAAAGA TACCGGCTCT GAAGGAACAG 
    TTCAAGGAGT GCCAAGATTC CTTCCTTCGC ATAGTAATGT CTCTCAAGAG 
    TGCTGCTTCA GAGCTCAAGG TATCTCCAGA CACCGCCAAC TATGATGCTA 
    TGATTTGTTT CGACGAAACA AAGCGAGTGA AGGAGGTGAT CGGGAAAAAC 
    GAAGACGTGA CTTCGAAGAG TCTNATAGAG ATGACATTGC GTATGGAGAA 
    GCTCATTTTC TTTGCTCTTG GAGCCACCGA AGTTGTTGNA GGATNGANGA 
    CAANATATGA NAACATATAT CATCATGCTT GNCACAANAT NTGACCTGAN 
    ACCNTNTTAA TATATGGGGN GNATCGGCNT TCCAANTTTT ATTGGATNGT 
    NCCGAATGAC TTAAGATTTG ATNTAATNGG GAACACTANC GAANNCTNTA 
    AAAAAAAAAN AGNGNTNANN CGANCANGGN TCNAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20507965 [Map]; Strand: c
      • AT1G54980.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-2774-1 - 3-prime edge 
    ACCCTATGCA CATATCTAAA TATAGATGAT AAATAAAACA TAAGTTCAAA 
    AATTTAATCA ACAACCCTTA CATGTTAACA TATGATAAAA CATAATTAAA 
    ATATGCAATT TAAAAACTAA TTTAAGGTGG ATATGTGGGT TTGATATTAT 
    TACCAAGCCA GTGGCGGAAG CCGCAAGAGG ATTGGCGCTC AACGTTTGCA 
    AACAAAAGGT TTTGTCTTCA ACGGATTGCA TCTCACATAA TTTATCTATG 
    TATTTTGTGG AGGTCAAGGC CGAAGCAGAC ACTATGAGAA ATTGTAACAA 
    AACTGCCACT GAAAGGACGA AGAAACAATC AGAAGAAGAA ACTATTTCCT 
    CTACCACTTG TGTACAAATT GTGAATTTAT TTTTTCATGT TCTTGCATTT 
    ACTTTATACC TTGTAAAGTG ATCGGCAGAA TCTTTTTCTT CATGATTTGT 
    TAGCATCTAG TAAAGAAAGA AATCTGACCA TTATATATTT TTCCTTATGA 
    TTCAGCATCT ATAGTAAAGA AATAAATCTG ACGATTAATT ATACATTTTT 
    CCTCATGATT TAGCATCTAT AGTAAAGAAA GAATCTGAGC AATATAAAAT 
    AATTTCCATT TCTAGAGTAA AAGAACTGAT TTTTGACAAT ATATTTTNCC 
    TTGTTAATTT TTATCATACT ATAAGCT

AT1G54980.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G50070.1); Has 38 Blast hits to 38 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR