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12-2787-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21529695 [Map]; Strand: c
      • AT1G58140.1 - [+] show detail - transposable element gene
        Distance: -311; Region: promoter
      • AT1G58150.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 ...
        Distance: -408; Region: promoter
    Flanking Genome Sequence: 12-2787-1 - 3-prime edge 
    CTTGTTATAG AAGTCATAAA TAATTCTTTT TGTTTTTGAA ATATTAAAAG 
    TTCGACATGT AATTCTCAAT TTTAATAAAA TGAGCACTTT GGTGCCTCTA 
    TGTGGATTTT CTACAAGATC AAGTCAACAA GAAAAACACA GAAAATGGAA 
    AAGCCTAGAA ACGAGACGAT GCCTGTTTTA GTGCTGCGAG GTTTCATAGT 
    GGGAGCAATA TTTCTGATTA TTTGGAGCAT ACGACGTGAG TTCCGTCTAT 
    CTCCTCACTC TATTGATTTT GGTGTAGCCC TTGTTTATTT GCTTATGTTT 
    ATCTTTTTGA TCTGATCTAT AAATATATAT ACAGGTTATC AAAAGGCCTC 
    CACCAAAACC AACTCAACAT CTCCGCCTCC ATCTCCGCCT CCATCTCCGC 
    CGCGAGTTCC AGACGCTCAA GAATTGGAGT ACCTTAAATC CGACTCTTTT 
    CCCGAACACG ATGCGTGGAG TTGTCATTCG GGCGGAGGTG TGCGTTCCGA 
    TAAAATTAGG CTACCGCCGC GGCTTTCAGA CCTTCTAGAA TTGGAGAAAT 
    TGTTTCCCGA ACACGAGGCG CTGAGTTGTC CTTTGGACGG AGATGAGGAT 
    TCCAATGAAC TTAGGCTACG GCCGTGGTCC AGACGCTCAA GAATGGGAGT 
    ACCCTAAATC CCAGTTATTT CCCGGACNCG CNGCGNGGAG TTATCNTCAT 
    TCNGGCCGGA NGTGGANGTG GAGGCGGNNG GCGNNNTATT NACAAATAA

AT1G58140.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.6e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G58150.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR