1. Home
  2. Mutant Lines
  3. 12-2852-1

12-2852-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4869714 [Map]; Strand: c
      • AT3G14515.1 - [+] show detail - pseudogene, terpene synthase (fragment), similar to C-term of terpene synthas...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-2852-1 - 5-prime edge 
    AGATTAAGCT GATGTAAAAA GTTATTTTTC TTTTTGAATA TAATTTGACA 
    TTTTATTCAA AAAAAAAGAT TGGCTCAATA CCACTCCCCT AATCATCCAA 
    AAACTGCATT TAGTATTCCG TTTAGGAAAT GACGTAGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4869830 [Map]; Strand: c
      • AT3G14515.1 - [+] show detail - pseudogene, terpene synthase (fragment), similar to C-term of terpene synthas...
        Distance: -15; Region: promoter
    2. Chromosome: 1; Position: 17597050 [Map]; Strand: w
      • AT1G47786.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -848; Region: promoter
    Flanking Genome Sequence: 12-2852-1 - 3-prime edge 
    CTTAATCTTA TGTGAGTTGA ATTATTTGTT TTGATAAGAA ATTACAATCT 
    GAGAGCTTAA CAGAAAGAGC AGAGAGAGTC TAGAGCCTTG TCGAGAACCA 
    GACTTGTAAT CCGTTCTCGT AGCGGCGGTC TCCTGTCGAG ATTATGATGG 
    AGAGTTGATT GCGAATCTGT TTGTCCATCC AAGTAATGAG ATTGGCTGAC 
    GTTCTAGGCT CCTCACCATG GCGTCGATCA TTTCTCTCCT TCCAAACCGT 
    GTGTACTGTG AGTTGGAAGA TATAACGTGA CAAAAAGCTC TGAATT

AT1G47786.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G47780.1); Has 1065 Blast hits to 1060 proteins in 341 species: Archae - 0; Bacteria - 365; Metazoa - 320; Fungi - 98; Plants - 152; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14515.1

Model type
Pseudogene
Computational Description
pseudogene, terpene synthase (fragment), similar to C-term of terpene synthase (TS1) GB:CAA72074 (Arabidopsis thaliana); blastp match of 37% identity and 2.4e-15 P-value to GP|15321626|gb|AAK95517.1|AF401234_1|AF401234 cyclase {Nicotiana tabacum}
Link
InterPro Scan - TAIR