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12-2904-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17977322 [Map]; Strand: w
      • AT4G38390.1 - [+] show detail - root hair specific 17
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 12-2904-1 - 5-prime edge 
    GGTCANGCAN CGCGCCCNAC NTACAGCCNN NCCCTCCGTG CGCGGATCAC 
    CAGNCAGNGC NNAGGACNAN CCTTGCNTTN TACTTCATCT CANGTACACA 
    CATACAAATT AATATCTTAA TATGTAATAA CATTTTNCAA GTGTGTAGCT 
    AATCAATGTG CATGTTGGTT CCTAGATTCG AACCTGATAT GCGTGGCCTT 
    CTCCGGATGC TATTACGGNG GNGGTCAAAA GGAGAGACTC GAACTCGGAG 
    CTATGAGAAG AAGGTGGAAA ACGTNACATG TGAGAACATN ATGCATTGCT 
    NANTTTGAAT ACCATAAATG AATGTTAGGT GCAGTATCAA CNGNTTNTTA 
    ATTCTATTAT NGGGGANGTN GCAANTGNGC AGGCNGGTTA NACCCTGAAA 
    AGGTACTGGN NGCCCTGNAN ANGAAACCTT GACNNNAATA NGAGATTGGN 
    NTGANGCNNA ATAAGGCTTA GGTTTTNNGG ANAGAGGCNA ACTTGGTATG 
    CAGNNTCAGG CCNAGGNANA CAGNGNGGGA NGATNCCATN GGCNACTTTA 
    NNAACCCGTG NNATACNAAN TGNNAAANNC GANNGNATAC CCNNAGNCCC 
    AGANAAANAA ATAGNCNCNN ANCGGNTAAC CTTCNANAAA CNNNACNGGA 
    GNATATGAGA ANAGNNNNNG ATNTGGAAAC AAACAANCCA ATGNNNAAAN 
    NGCATANAAA NAAGAANGGN NGGTCGANAA TTNATAAACN GTGAAAANGG 
    AAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17977206 [Map]; Strand: w
      • AT4G38390.1 - [+] show detail - root hair specific 17
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 12-2904-1 - 3-prime edge 
    ACCTGACGGC ATGGTAGTTG ACTCTACAAC GCAGTTTCTG GAGCTCTGTA 
    TCAAGAGCGT TGGACAGCCT GTAATCGAAT TTGGAGAGTT GTACAACCTG 
    CAACATTTAG AAAAAGATGA GCATATGTAC AATCATGATA GATATAGTTT 
    GGAAGAGGAG AACTGACATG TTTCTTAGTA AGAATGGGCA AAACACGCTG 
    CAAGTAGCAA GAAGGCGTGC ACTTCCTTGG GACACGCATT GACTGTAGGC 
    TGGTGGATAT TCTTGACTGC TCTTCTTTAG GAAGCTCCTT GATGATCTTC 
    ACGTCTTTGG AGAGATGCGA TATGAACCAA TCAACATCAA ATATATCCTC 
    AAAGTTGCTG CGTACCACAA AACAATTCAA AACAAAACCT GTGTGTTAGA 
    ACTTCGAACC AACAAATTTT TAAAATGGGA ACAGAGAGGG ACAGGGCAGG 
    GACCTGGTGT CCTTCCAGTA CGACTTCTGG TCAAGTTTAG GGACCACAAG 
    AGTGGCGTTT AGAATGTATG CCGCTACTAC AGCATCTATT ATCTGCAGTA 
    GAAACCAAAC TTAATCAGAA ATATATATAT GAATTAACCA CTTGAAGAAG 
    CATCATAACA CACAAGGAGG AACTCACCCC TGTCCGCTGT TGGGTTTAAC 
    CCTCCGCTTG TTGCNATCAN TAAATACCGA TTGGTTTGGC TTCTCGTATC 
    CGNACTGCCN NAATTTCAAT TTAAGTCAAT TTA

AT4G38390.1

Model type
Protein coding
Short Description
root hair specific 17
Computational Description
root hair specific 17 (RHS17); CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G20550.1); Has 829 Blast hits to 827 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR