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Mutant Lines
12-2924-1

12-2924-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 30117557 [Map]; Strand: w
- AT1G80060.1 - [+] show detail - Ubiquitin-like superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G80070.1 - [+] show detail - Pre-mRNA-processing-splicing factor
  Distance: -495; Region: promoter

GNNAAAACAG NGCGCNNGAG GACANGCTCT CNNTNCCTGG GCGGATCATA 
CAGGCTGGGC NGCGAANAAA TCCTGCNCTN TNNGCTCTTC TTCTTCAGCC 
TTCAGGTGAC TGTTGAGGAG CTGAGCGAGC GAGCGAGAGA ATCGGGAGAG 
TTTGTTTTCC GGGGAAAAAC CGCAATTACT GCTATATAGC TCCCCAATAA 
ATGCCAAAAC AAAAAATCAA ATTAAAGTTT GTCAATGGGC ATCACGGCCC 
AAATCTAATA ATCAAAGGCC CAATAACTTG ATTCGACAAT ACTTAGCGGG 
TTTGGATAAC CGCCTAAGCA TCTGTTCGAC ACCGCCTATT TTTTTTTTTA 
ACTAACCCCC CCGNATCGGG GGANANANGG NCNAAGGGGA NTAAAAAAAA 
AAANGGGGGN NAGGNCNNNC CCCCNAANGG NGGGGGGGGG NTTTTTTNCC 
CANAAAAACC NANNGGTTTT TTCNAANNNN NNGAAAAANA NCANGGGGNG 
GGGGGGGTTA NNGGGNTTTT TTCNCCCNAA AAAAACGNNG GGNTNNAAAG 
NNGNAACNCA ANAANCNTNG GNAAAAAAAA AAGGGGGGGG GCCNTTAAAA 
ACCCCGGGGA AGGGGGGGGG AAANAAAGGG ANNCCACCCA GGGNGNGNAN 
TNTNTNNNAA NGGGNGNNTN CNGNGNTNTN NNAAGANATN NATGGGGGNN 
NNTNNTTNNT NGGAAGNGNG GG

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 30117441 [Map]; Strand: w
  - AT1G80060.1 - [+] show detail - Ubiquitin-like superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G80070.1 - [+] show detail - Pre-mRNA-processing-splicing factor
    Distance: -611; Region: promoter
Flanking Genome Sequence: 12-2924-1 - 3-prime edge
```
GTCGTCGAAG TGGAGGACTG AGGTCGTTGA TAGATCCACG CTTCTTGTCA 
TCGTTTGCTT TAAACGACGG TGGTTCGATT TCTGGACGGA GATCTTCCTA 
CCTGAAACTT CCTCCTCAGG GTCGTATCAA GCT
```

AT1G80060.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G32270.1); Has 129 Blast hits to 129 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80070.1

Model type: Protein coding
Short Description: Pre-mRNA-processing-splicing factor
Curator Summary: a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality.
Computational Description: ABNORMAL SUSPENSOR 2 (SUS2); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), PROCN (InterPro:IPR012592), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT4G38780.1); Has 828 Blast hits to 729 proteins in 312 species: Archae - 0; Bacteria - 2; Metazoa - 333; Fungi - 220; Plants - 69; Viruses - 2; Other Eukaryotes - 202 (source: NCBI BLink).
Link: InterPro Scan - TAIR