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12-3105-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30112204 [Map]; Strand: w
      • AT1G80040.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -924; Region: promoter
      • AT1G80040.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -934; Region: promoter
      • AT1G80040.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -924; Region: promoter
      • AT1G80050.1 - [+] show detail - adenine phosphoribosyl transferase 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-3105-1 - 5-prime edge 
    GNTGAANNTG NNNNCANCNC AGTNATNAAT ANATANGAGN AGAAGANAAA 
    NCAAAATGCT NNTCCANACA NGGATCNNCA NGNCCTGGGC NCGACAACCA 
    NCTCTNNGNA CTAAAGTGAG NACGTNTAAG CATTATCACT NNGCCTTTTT 
    TAACATNACA ATCAATAGTA TCCTTCAATA ACACTTTTTC TATTCCATCA 
    AAATGTACGT TTTTGTCTGA GAAGTGATAT GTATGTATAT TACTAATCGT 
    ACCGGGTAGT TTTCCCGGTT TGCGTAGTGG AACGAACTTG GCACCTATGG 
    CTAACGCGAT GGGAGGTCCA AATATGAATC CTCTNGCCTC TACTCCTGCA 
    TACATNAATC TATGTNTTTA GTATTTCTTA NACATTNGTA ATNATGTNCC 
    AAAAAGGNGN ACTANAAGAC AAGAGAAAAA ACAGGAGACA GACTAACGAC 
    AATAATAAAG AGTAAGGGAT AAGTANCTAG TNNCCNACCN CNNTGGACAG 
    ACTAGTNTGN GAGCGNCAAA NCNTNANTNC NNTGNNGGNN GGNNANNGAG 
    GTGATNNAAT NTNGGNGAGN GGNGGATATA ATNACANCNT NNGANTNTAN 
    NTGGNNGGGT NNNATAAANN GAAANAANGN ANANNGNGGG ANGNNTTNAN 
    ANAAAAAGNN ATNNATTNNG GGNNTGGTNG AAGNNGTNNN NNNNAANANN 
    ANAAAGNGNN ANANANANAN NAAAANAAAA AAAANNAGGG GGGGNANNGA 
    ANAGAAANAA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30112151 [Map]; Strand: w
      • AT1G80040.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -871; Region: promoter
      • AT1G80040.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -881; Region: promoter
      • AT1G80040.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -871; Region: promoter
      • AT1G80050.1 - [+] show detail - adenine phosphoribosyl transferase 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-3105-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TACTCTCTGC TTCCATTAAC CTCTTGGGTA AATAATATCT TTCTACTTTC 
    ATTAGCTAGA AAATGAATGC TACATGCTAA ACAAGATGAT TTATATATTT 
    ACGCTTAAGA AGTTGTATAT TATATCTGAG TATAATTATT GAACTAAAAG 
    TGAGTCTCTT CTATGCACTT TAGAGCGTGC CGGGGCCGAA GTTGTAGAGT 
    GTGCATGCGT TGTTGGTTTG CCTAAGTTTA AGGTACTATA TGACCTACTT 
    TGTTCGTTTG CATAAGTTGA AGGTCTTTTA AATTCGCGTC AATAATATTT 
    TGGGCTTTAA TGGGCGCTAT AGGCCCATAC ATTTGAAGAT AATAAAATAA 
    CTCATTGTCT ACGATATGTA GGGGCAGTGT AAGCTGAAGG GAAAGCCTTT 
    GTACGTTCTG GTGGAACCAA ACCAGTTTGA TGAATTAACC TTATAAAAGC 
    CTTTTCTATT CAACGATTAT GACAAATAAT GTAATCGGTT TAATCGATTT 
    TGTAACTAAG GATTTGTTTG TTTTCTATTG GCTCCATGTG GAATGATTCA 
    TACTAGTTAC TATGAAATTC GGAATACGAA GGTATGCAGT ATTATGCACC 
    ACTGTTCTTC AGATGAATGA ATT

AT1G80040.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80040.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80040.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1).
Link
InterPro Scan - TAIR

AT1G80050.1

Model type
Protein coding
Short Description
adenine phosphoribosyl transferase 2
Curator Summary
Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.
Computational Description
adenine phosphoribosyl transferase 2 (APT2); FUNCTIONS IN: phosphate transmembrane transporter activity, adenine phosphoribosyltransferase activity; INVOLVED IN: adenine salvage; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyltransferase 5 (TAIR:AT5G11160.1); Has 8411 Blast hits to 8411 proteins in 2474 species: Archae - 199; Bacteria - 5670; Metazoa - 171; Fungi - 181; Plants - 165; Viruses - 0; Other Eukaryotes - 2025 (source: NCBI BLink).
Link
InterPro Scan - TAIR