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12-3130-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30145481 [Map]; Strand: w
      • AT1G80133.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 p...
        Distance: -1226; Region: intergenic
      • AT1G80140.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -1130; Region: intergenic
    Flanking Genome Sequence: 12-3130-1 - 3-prime edge 
    CATCAGAGCA CAAACACTCA GAATCTCGCT CTCAACGTTA AGTGTTCGAC 
    ATCCTAATCA GAGATTCAAA TCGAGAAGAA AGCGTTGAAA TCGGAAACCT 
    GCTAAAGTCT TGAAACGAAT CAACCAAACG AAACGAATCA ACCTATAAGT 
    TTTGACTATT TTACAAAATG GGCTACCAAT AAAATCTAAC TTAAATACAT 
    GTATTACTAA ATTTAAATGT TTTTTTAGAT GTTTCCTAAT TAAATGGTAG 
    TTAAAATTCT AAAACACAAG GATTGTGAGA AAATCTCATG AAATCATTTT 
    TTGAGTTTAG AAAAAGTTGA AATGACATCC CTTCTCTAAA CCTTTAGATT 
    CATTTTTTTT TTTNGTTGGN NAAACCCTTG GGNTNCNTTA AAATGGATTT 
    NGGGGANNGG NAAAATGGGG GANNNNTTTN GCCNNCNNAA AATNCNNAAC 
    CCNGGGNTTN GNCNTNGGGN NTTTTTTTTC CAAATTTNAA ANTTAANGGA 
    ACCCCTGGGA AAAANTTCNN GNTCCCAANN NGNCCGNGNN AANGGAAAAA 
    ANCCCANGTN ANTTNNTNAN AAAGGNNTGG GNNTTNANNA CTTTNCCCCA 
    ANGNCAACAG NACCGTTNCC CCAAGGGGAA AGGGTTGGAN TAACCNTAAN 
    GANNCACCAT TAANTTACCG NAANGGCTTT GGGTTTTNNC CNANAAACTT 
    NACCTATTTT TTNTGGGGNG NNNTTTTNCC CAATGGGNAN

AT1G80133.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80140.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 3888 Blast hits to 3869 proteins in 461 species: Archae - 6; Bacteria - 1036; Metazoa - 13; Fungi - 1239; Plants - 1472; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link
InterPro Scan - TAIR