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12-3293-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 416231 [Map]; Strand: w
      • AT4G00960.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 51; Region: intergenic
      • AT4G00970.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 41
        Distance: -2206; Region: intergenic
    Flanking Genome Sequence: 12-3293-1 - 5-prime edge 
    GGTAAANCNA CAGCACNGGN NGGNCAGCCA CNCCCAGCNG GGNGAGGANN 
    AGGCAGNGGG GGNCGACNAC NNCGGGNGNA NAATAANGAT GTTGCNGGAT 
    ANGTTGTAAA AGACTTGTTA AGCATGANAA CTNAANTGGN GTNGTTNTAT 
    AGAGTAANCA NNANCTGAAT TTGAGATGAT AAACAGATTN AGAAGANTAN 
    TTTTAGGNAT CCTGNATNTG AATAATTTAA CNAAAGAAAA TTAAGGCAAC 
    AGANAGGCNC AAACGACAAG ANGAGCANNG NGAGGGAGNG NGATNANAAA 
    GANNGCNNAG NCTATGAANC AGAAGATGAA GGAAGNGAAA ANGAAGGNAG 
    NGAGNGNNAN GAGAANGAAN GAGNGTGNNA NNNCNGAGNA GTNGGAGTGT 
    GAGGGNAGNT GATAGNATGN AAANANAGNT TAACANNGGG GNGAGNCNNN 
    GCANAGNTAN NGGGNGNNAN GGAANGAANN GAGNGNAAAA AAAAGTGAAC 
    GNATNGNAGG GGNATNANGA AANNNGNNAG NGNTGGANAT NGNGGGGANG 
    GGGNGANTGG NNNTNAAGAT GGANGGAGGA GCGNANAGGG GGGGAAAANA 
    NAGTGNGGNA ANGAGAGANT GGNGAGCGGN NGAGCGGGGN TCGATGAGNA 
    NGGAANAAAG CNGNGGGGAN NGGNNGGAGG AGGAGGNGGG NGGGNGNAGA 
    NAGNAAAGAA GGAAGNAAAA GGGNGAAGAA GGAGAGANGN NNAAGGANTN 
    GAGCTNAGNN GNNNTGGGTG GCNGGGGATG NCGAGAGNAG TGNNGANGGG 
    ATNANNNAGA GC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 416160 [Map]; Strand: w
      • AT4G00960.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 12-3293-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    CGTAATTGTA ACATCATTCA AAGACGCAAT ACGCGGGTTT CTTGTATGAT 
    TGTTGTCTCT TGACGATGAG TCTACAACTC CTGAGTAAAA AGCGGGTTGC 
    AAGGGTCTCG GTAAAGTGAA AGAATTTGCA TTGAGCATTC TAACAATAGA 
    AGCCATTGTT GGTCTACTCC CTGGATTCTC CTGAACACAC AACAAACCAA 
    TGTGAATGCA TTTCCTGATC TCATCACTTA GACCTCTTGT TTCAATCAAA 
    CTTGGATC

AT4G00960.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (TAIR:AT4G00970.1); Has 115688 Blast hits to 114341 proteins in 4243 species: Archae - 87; Bacteria - 12866; Metazoa - 42714; Fungi - 9727; Plants - 32895; Viruses - 425; Other Eukaryotes - 16974 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00970.1

Model type
Protein coding
Short Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 41
Curator Summary
Encodes a cysteine-rich receptor-like protein kinase.
Computational Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (CRK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (TAIR:AT4G21410.1); Has 118247 Blast hits to 116820 proteins in 4488 species: Archae - 94; Bacteria - 12773; Metazoa - 43795; Fungi - 10171; Plants - 33437; Viruses - 407; Other Eukaryotes - 17570 (source: NCBI BLink).
Link
InterPro Scan - TAIR