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12-3305-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30314788 [Map]; Strand: w
      • AT1G80650.1 - [+] show detail - RNAse THREE-like protein 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-3305-1 - 5-prime edge 
    TCACACTCCA GCCATGTNAC NCTNNTNTCN NGCTNACAAA AANATACGAN 
    CATTGGGGGN TNGANACNNA GAACNNGTCT CGNGCGNNNC NNATNNGAGN 
    ANNATACTNC TGCTGNGANT TGGCTATATC GGNGGGTNAA TANTAATAAG 
    ATANCTCANN NTTGCTTCTG CCAAANGTNN NAANCCANTG CCGNAAGAGC 
    ATNNNNNTGN GGGAATGCCN ANNTNNCNNN ANAAGACTGA CTNCNCGTNG 
    GNAGAGGAAG ACANNGCCNT NCCTNCCTNN NCTAACATNC ACATNGATNC 
    TGACAGCACA AGAAGCATTG ACTAGAGAAN ACGCTNGCTC CTAAACCAGA 
    TGAAGAACAC ACCACCACCA NCAAACGNCA TATCTAAGGN GTTNATATCA 
    TGTTTTTCTT NACCTATGAT NGCTAATCAT GAAGTAAACT GGACCGGNNA 
    CCNACANAGA TTGCNANNTT NGGTNTNNAA GAACCANTCT TGGGCCATNT 
    TTGNNCTGAA NTTGGCGTTC NAGATGATGA ATCTAAGACC TAGGAGAGGC 
    TCAAGCTAAA TCGGNGTTAC NCGAAATGGG NGGCTTCCAA GCGTTGGANA 
    CCTCCNGGTT ATGAATGCNG CAATGGTGAT GGGACCCTTG CCATTTGAAA 
    TTGNAAGNAA AATTCTTNTA ACCNGGNCTT GCTTTTATTT TTGNGGNACA 
    ATNNTTTTTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30314680 [Map]; Strand: w
      • AT1G80650.1 - [+] show detail - RNAse THREE-like protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3305-1 - 3-prime edge 
    GGAGTGAATG AATATTTACC ATAGAGGGAA TAGAAGAAGG GTCGAGAGGA 
    GGAATATCTT TGAGACTGAT GATGATCGAT CTTGACGGTT TTTTGGTTAT 
    CCGCTTCGTT TCCTGATCCT CCATCTTTCA TATTACTACT CCTTGTCTAA 
    TTCCGAGAGA TATCTTTGGG AATCGAGAAA TTGAAAATTT TATCGATCAT 
    CGACAAAACG GATAAGGTTC ATTAATTAAA TTCATTTCCC CACAACAACA 
    AACTCTGTTA TAAAAAGTCA ACGTTTTTAT TTATTTATAT GTTAAAGCT

AT1G80650.1

Model type
Protein coding
Short Description
RNAse THREE-like protein 1
Computational Description
RNAse THREE-like protein 1 (RTL1); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: Double-stranded RNA-binding domain (DsRBD)-containing protein (TAIR:AT4G00420.1); Has 100 Blast hits to 100 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR