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Mutant Lines
12-3378-1

12-3378-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 5887572 [Map]; Strand: w
- AT5G17810.1 - [+] show detail - WUSCHEL related homeobox 12
  Distance: -4897; Region: intergenic
- AT5G17820.1 - [+] show detail - Peroxidase superfamily protein
  Distance: 334; Region: intergenic

GNTANATAAN CAGNCNGGNC NGGTNNNCCA CCCGNGCCAG GCNCGGNTNA 
AANCTGGGAN GCGTCAANNA NNNGTGNCTT ATACCATCGT CAAAGCCCAT 
ATTATTATTA TTATCCTTTT TTTTGTTGTC GTCAAAGCCC ATATTATTAT 
ACTCACCAAA AATGCATGAA TATGTTNGTG TTTTTCTTTT TTGACAGCAG 
GATATGTTTT CTTTTTAATT NATTTTGATA ATAGATTTCT TTTCTAATTA 
CTTAGATTAT ATGTCATGCT GAAAATTTAA TCCAGCTAAG TCTATAANAG 
TAGAGTTGTA GTTAACTAGG GATAGAATAT GCATATTTTT GTTTAAATTT 
TACTTTATTT ATTTATTTAT ACTTAGTTCG TTTTTGCTTA TAGAGTGACA 
ATTTTATGAA AAACAATATT CATATATATA TATATATGAT NAACCATGAT 
AAAGATACAT ATCAATATTT CAATACCACA AATTATGTGT AAACTTAAGA 
TACATCCACC AAATGCAGAC CAACAATATA GTATATAGTA ATNTTTCTCG 
AAAATCGAAA CCATCCAATT TAAGAAAAGC CTTATTTATG NAANAAAACC 
CCAACCAAAA CCAAAAGTGA NTTAGTAAAA ATATAAAGAA GATTNGAAAT 
TTTTNGTATA AAATGTAATA NTATATCCCA CGCTTTGGGT AGTATATNAG 
NAGAATNTTN NGNAGTTCCT TGTGATCTCA CCGTTANNAA CAGTANGCAN 
A

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 1511487 [Map]; Strand: c
  - AT1G05210.1 - [+] show detail - Transmembrane protein 97, predicted
    Distance: 0; Region: exon2 (3UTR)
  - AT1G05220.1 - [+] show detail - Transmembrane protein 97, predicted
    Distance: -420; Region: promoter
  - AT1G05220.2 - [+] show detail - Transmembrane protein 97, predicted
    Distance: -456; Region: promoter
Flanking Genome Sequence: 12-3378-1 - 3-prime edge
```
GAGANAAGGG GGGGNNGGGG GGGNNGGAAN GAAAAAAAAA AAAATTTTNN 
NNGNANNNTA AGGGACNAAG TANTAACTNA CCGGGACCAA ACCGTTTTCA 
TCCATCTTTT TCTGTATATG CCTAGAAAGA GGTGTCTATT TAGNCCTTGT 
GAAAACTTTA TTGCTTTCTG ATTTATGTGG AATT
```

AT1G05210.1

Model type: Protein coding
Short Description: Transmembrane protein 97, predicted
Computational Description: Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT2G32380.1); Has 151 Blast hits to 151 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 14; Plants - 77; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05220.1

Model type: Protein coding
Short Description: Transmembrane protein 97, predicted
Computational Description: Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT1G05210.1); Has 151 Blast hits to 151 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 15; Plants - 75; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05220.2

Model type: Protein coding
Short Description: Transmembrane protein 97, predicted
Computational Description: Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT1G05210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G17810.1

Model type: Protein coding
Short Description: WUSCHEL related homeobox 12
Curator Summary: Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.
Computational Description: WUSCHEL related homeobox 12 (WOX12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 11 (TAIR:AT3G03660.2); Has 533 Blast hits to 523 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 532; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G17820.1

Model type: Protein coding
Short Description: Peroxidase superfamily protein
Computational Description: Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G03670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR