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12-3379-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17372350 [Map]; Strand: w
      • AT2G41660.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 3161; Region: intergenic
      • AT2G41670.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -1733; Region: intergenic
    Flanking Genome Sequence: 12-3379-1 - 5-prime edge 
    GGTTCATATT TTTCTTATGT TTAGAGATCA TCAAGTAGAA TTAAATGAAA 
    AGTCGTTGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17372234 [Map]; Strand: w
      • AT2G41660.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 3045; Region: intergenic
      • AT2G41670.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -1849; Region: intergenic
    Flanking Genome Sequence: 12-3379-1 - 3-prime edge 
    TATGAACCTA TAAGAAAATT ATAAGATATA GAAAAATCAT TATTAGATAC 
    AAAATAGGGT GTTGAGAGTG ATGATTGATC TATGTGACCA AAGGCGCATG 
    TTACCACTAC GATTGAACGA TCACCTATAT CATGTATGTT ATATGGTTGG 
    TTGGAAATTG ACTCGTGAAG CACCATATGA GACAATCTTT ATATATAGAA 
    AAAGCATCTT AGCATTTTAA ATTCGAAGGT AGATATATAA GGTTTATGAT 
    ATAATAACGT TAAACCCCAA AAAGGAAGTT TTAGGATAGT AAGGCTAATT 
    GAGGTTCATT TATTTGACTA CGAACTTTTA TTATATATTC TCACAACGAA 
    AATTATGATT TATCATCGCC AATTGAGCTA AGCGCCCATA GTGGAATCCT 
    CTTTTAATGT CAGATCACTA TACAACTATT GGATATACAG TATACAATAG 
    TTTTACATAT AAGAAAAAGA AAAACAAATG ACAAATCTAC GTTAAGAATT 
    AACACTCAAA AAAATTAATA TAAAACTTTG TTTTTATTAT TTCTAGTATT 
    AACGCTCCGC AGCTATACAC GTGAAGATCA CTACAAATCA GAAACAATGT 
    ATACATATGC CGTGGGCAAG AGAATT

AT2G41660.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Curator Summary
Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.
Computational Description
mizu-kussei 1 (MIZ1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT3G25640.1); Has 258 Blast hits to 256 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41670.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G10650.1); Has 3980 Blast hits to 3980 proteins in 1445 species: Archae - 109; Bacteria - 2376; Metazoa - 398; Fungi - 429; Plants - 195; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).
Link
InterPro Scan - TAIR