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12-3450-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23211217 [Map]; Strand: c
      • AT1G62690.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: 0; Region: intron1 (5UTR)
      • AT1G62695.1 - [+] show detail - transposable element gene
        Distance: -528; Region: promoter
    Flanking Genome Sequence: 12-3450-1 - 5-prime edge 
    NTTGNGTCAG GGNAGNAGTA AACCTGAGTT GACTGGNAGC AANCATCAGT 
    CTGATTGCCA NCGATAGACN TTAAANNGGT AATTCCATTA ANCTACAAAA 
    NNGGGGAAAT TGCTNAGAAG AGTTTCTAAT TNTGTGAAAT TGATGGTGTT 
    TTATAGGTTT TGGTTTGGAC AAAAAGAATG CGGTACAAGA GAAGATTTGT 
    GACAGTTTAC AGAGATTTTC CAGAAGGTTG TGGTGTTCCT TCAAAACCTA 
    TATCCAATGC TGATGAAAGT TTTATGCAAT CTAAGTTCAA TAAGGTAAGA 
    AGAGTCATCA TCAGATTTGT ATTCAGACTT TGTAATGTTT TGTATGCTGA 
    GTGATTAATT AGAATTTGTT TGCATATGTT CAAGGATGGA ATTGTCTTGC 
    AGGCTCATGA AGACTTNTCA AAGATAACAA AGGAGTCATN GAATCATTNN 
    GAGACCGNGA ANTNCCAGCC CGGGNNGNNN ANNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23211324 [Map]; Strand: c
      • AT1G62690.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G62695.1 - [+] show detail - transposable element gene
        Distance: -421; Region: promoter
    Flanking Genome Sequence: 12-3450-1 - 3-prime edge 
    AACACAAGAT TATGATTCGA AGAAAAGAAG AAAACGTTAC CAATGGAGAA 
    AAGTCGTACA GGAGGAACAG AGAGAACCAA TTTACCTCAG ATTTGCTCTA 
    TGGGGGTTTC TTTCTGATAA AGCGGGGCAA GTGAAGCNTG AAGCATGTAT 
    TAAGATAAAA TCGTTACATT TATACGCNTT TTTCTAAGCC CAATTGTTTA 
    GCAATAAGGC CCATCAGAGA ATATTTATTT AGGGATACNT GTACGTAGTA 
    CATTATGAAA ATGATTTATA CGATTATATC CATGATATCA TGCGCCAAAT 
    TATATGATCA AACTAATGAC TTGCATTGTT GAGTCCTTGA TTATTTGTCA 
    TATACATTAA ATAAATTTGT TAGTCTTGCT ATACATAATA CATTTGATTA 
    AGTAGTACTG ATGATTAATA AACTTAAGAA GATTCGAATC CCTTCGTTTT 
    TACCATTAAA AACCCCTGAA GAGATTTTGG GTTTTGTCAT TTGTGGCGTA 
    AACGTAAGCC CTAAACACTG ATGTCTTTTT TGTTAAAAAG AAAAACACTA 
    ATGATAAAAG GTCACATGGT TTTGTCTCAC NTAATAATGC TCCCTANGTT 
    ATTGAGATCA ATGTCTNATT ATAATGGTCA ATTTTTATTA ATTGTTCTAT 
    GCAATNAAAA GTCTGATATT ATCGAANGGG TTCCCTTANA CCGNAATTNT 
    TGTNNGATGT CANTCCCNAA GAGCACGCCC CGAATAATGA NTGTTCCTTN 
    AAAGANTCA

AT1G62690.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62695.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to Unknown protein, blastp match of 30% identity and 1.6e-09 P-value to GP|22773232|gb|AAN06838.1||AC099401 Unknown protein {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR