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12-3549-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2233208 [Map]; Strand: w
      • AT3G07050.1 - [+] show detail - GTP-binding family protein
        Distance: -847; Region: promoter
      • AT3G07055.1 - [+] show detail - pre-tRNA
        Distance: -708; Region: promoter
      • AT3G07060.1 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-3549-1 - 5-prime edge 
    ATGTCGACGA GTATCTCGAG CTTCTTCTTC TTCTTCTCCT TCCTCTCCAC 
    ATGTTGATTT GCTCTTTTTT ATTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2233136 [Map]; Strand: w
      • AT3G07050.1 - [+] show detail - GTP-binding family protein
        Distance: -775; Region: promoter
      • AT3G07055.1 - [+] show detail - pre-tRNA
        Distance: -636; Region: promoter
      • AT3G07060.1 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-3549-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GTCGTACTGA TGCAAATCTG AAAAGAGACT GTCCAGGACG AATTAGAAAG 
    AGACCATGAA AACACCTGTC CAAGTAATTA AGATTATAAA TCGAATTACC 
    CGCGAGAGAA ACGTTGTTCG ACCAATGTCT TGGATC

AT3G07050.1

Model type
Protein coding
Short Description
GTP-binding family protein
Computational Description
GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GNL3L/Grn1 putative GTPase (InterPro:IPR014813); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G52980.1); Has 11622 Blast hits to 10428 proteins in 1861 species: Archae - 158; Bacteria - 5948; Metazoa - 1715; Fungi - 910; Plants - 502; Viruses - 28; Other Eukaryotes - 2361 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07055.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Met (anticodon: CAT)
Link
InterPro Scan - TAIR

AT3G07060.1

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
embryo defective 1974 (emb1974); CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR