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12-3564-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13994665 [Map]; Strand: c
      • AT5G35810.1 - [+] show detail - Ankyrin repeat family protein
        Distance: -116; Region: promoter
      • AT5G35820.1 - [+] show detail - transposable element gene
        Distance: -818; Region: promoter
    Flanking Genome Sequence: 12-3564-1 - 5-prime edge 
    AGTACACCTC TTANTTAACT CATTCTTTTC ATATCANAAT ATATATATAA 
    GTNGNAGGAA CAAGTGGTCA NAAGTGACCA AAGTTTGAGA ATTATATAAC 
    CTATAGNCTA AACCTTTGTT TGAACATCAC ACCTGACAAG AACTNTTTCC 
    ATTTAGTTNT TAAAGGGGTN TTTCGNGAAG CCNAAATGCG GACTTTAACT 
    CATATNGTGG NAGAGGAGCT ATGGAGTTTT GNNATAAAAT TGCCAGNGGA 
    GGAAATTTCG CATNTTGTGG GANNATCTCC AATGCTACGC TTTGATGCTG 
    CACAATCTGG AAATCTTGAG CTTNTACTTA TTCTCNTNCN NNCTTATNCA 
    AAACTGATAT GGACGGTGGA TGATAANAAC CTGAANNTAN NNANNCCGGG 
    CCNNCNNCCA NGCNTNCCCT NNNAATNCNG TNCTTNNATT NCCCNTANCN 
    NNACNTGTNN NTTNTNTNCC NTNNCNATGN ANCCTTNTNN NTATNTNNNT 
    TNTTTANTAT TNCAATACNT AANCTNANGN NCNANNANNN AATGTAAGTN 
    GTANNNTNCN NNNGGNANNA NNCANNNGTG NTGNTGNNNN ATTAGTNNNG 
    NCGGNNGNGT CTNTGANNNT NANTANNGNN NTGTNNTGCN TTGTTTGGNT 
    TTNNANATNG NTAGNANNNN TAGNNNNNAN GNTNTACATT ANNTAACNTA 
    NCGNCNNNNN NNANATAGCN NATNTNAGCA CNCGCCGNNC NCGNNNNNCN 
    NNCAANATNC CCNNNCCNCT NCNCGCCCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14838283 [Map]; Strand: c
      • AT5G37410.1 - [+] show detail - Family of unknown function (DUF577)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3564-1 - 3-prime edge 
    AAAACGGTAG AGGTATTTNA CCGACCGTGA NGANCNCTTT NNNTNCTTTT 
    GAAATCATTG TGAAGGACCA ATTGGAATGG TACAGTACAA GCGAATACAA 
    ACTCGTTAAG GGTTTGCTTT GGAGACTCTA TGCACTCAAA GGCATGAAAT 
    GGGAAAGTAA GTTTGTGTTG TGGAGAATCA ACTGTGATTA TCGGATAGAG 
    GAGTGAAAGA AGAGGAGAAA GAGCCTGCCA CANAACGAGT CTGATTGGCT 
    GAACCGTACT GCTGATGAGA AGTTTAAATA GAAACCAGNT TTTTTGGTGT 
    ATAGTCTGAA ATTGTGTAGA GTCTATTTTT TGGTGTATAG TTTGCATTGG 
    AGAAGAAAAT AGTAAGAGTG TCGGAAAATG TACTTAGTTC TTGAAACAAT 
    TCACGAAAAG AAATTCTCAG CTAACACATC TAAATTCANA ACATCATGCA 
    TCAGAACAAG CTCAGCTTTG GTGGTGGAAT ATATATTGAT TTGATAAATT 
    GGATGTTCGC ATAGTAAAAT AGCTTGATAC AAGAAAACAT TNTATATGCG 
    TTATGCAACA CTTATAAAAT AAACATCTAC AACAACATAT TAAAATTCTT 
    ACAANANGAT GAAAAAACNG NTTTCACAAA CTCTCTTGAC ATGAGCTTTT 
    GTTATCAGAG AAAACCCCGA GTTGTCNATA AGAAGGNTGT TGNTGGGTAA 
    TATCCACTTG TGAACAGGTT GTGATCCTTA ACCACCAANN ACCTGCGGCA 
    TCACCTTNTA GTTGTTATTT CNNAGGATTC TTTGGANCGN CNGAANCCAA 
    ANTNTCTTNT GGGTTTCGAA

AT5G35810.1

Model type
Protein coding
Short Description
Ankyrin repeat family protein
Computational Description
Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G54070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35820.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G37410.1

Model type
Protein coding
Short Description
Family of unknown function (DUF577)
Computational Description
Family of unknown function (DUF577); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF577) (TAIR:AT5G37920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR