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Mutant Lines
12-3852-1

12-3852-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 23720868 [Map]; Strand: c
- AT5G58720.1 - [+] show detail - smr (Small MutS Related) domain-containing protein
  Distance: 0; Region: exon6 (CDS)
- AT5G58720.2 - [+] show detail - smr (Small MutS Related) domain-containing protein
  Distance: 0; Region: exon6 (CDS)
- AT5G58720.3 - [+] show detail - smr (Small MutS Related) domain-containing protein
  Distance: 0; Region: exon6 (CDS)

GAAGGATGAC AGTTATCATG AACTTAGAAA AGGTGCAAAT GACCAGTGGA 
ATGTTACGAA GTCCTACTAT CAAAAAGTTA GTTTTACTTG CTTCCATATA 
TCTGGCTCTG GTAGACTCCT CAACTAATGC ATTTATTAAT TGGTTTAAGG 
CTGCCGAAGC ATATTCGAAA GGAGGGAGGG CTCATGCGGC TTACCTTTCT 
GACAAGGTGC ATATCACGGT TTACATATAT CATGGTATCA TGGCATTTTG 
TTTGACAGTA TGACAGAAAC TTGTGTTGTT TTTCTTTTAG GGAAGAGTGG 
CATCTAAACA AGCTCAACGG GCTGATGAGA GGGCAAGCCA AGATATATTC 
GTTGCAAGGT TAGCTGTTTT GATGCATTAT CAAAGTATGC TGATGCGCTT 
AAACATTTTG TGGTGGACTA AGCCATTGTT TATGACTATG CAGAAACAAA 
GCTATAGAGA ATGTGGTAAC CATTGATCTG CATGGTCAGC ATGTTAAACC 
AGCAATGAAG CTACTGAAGC TACATCTCTT ATTTGGATCA TATGTTCCTT 
GTGAGTACTT AGCAAACTCA ATTATAAGTC TTTTCTTCTT TAGTAGATCA 
TCATAGTCAG ATCTTGTCAT CATAAACCCG ANATAATACC TTCCTCCTAA 
CAATTGTGAA ATCATNCAGC CATTCANACT CTACGAGTGA TCAGAGGATG 
TGGAGCTTCT GGGTTTGGGA AGN

AT5G58720.1

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.2

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.3

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR