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12-3944-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 357183 [Map]; Strand: c
      • AT1G02030.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-3944-1 - 5-prime edge 
    ATAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG GGATTTTCCC 
    ATCCTACTTT CATAAATGCG TACAAGAGTT GCACGCTATT GATACAAGGA 
    AATTTTGGTC TAGTATGAGG TAATAACGTC TCAACGAGAT AAGGTTAAAA 
    TTATTTAGAC ATGCTTGGGA AAATATTTTT GTTAGTAGAA ATTTGTAGAG 
    TAATGAAATT TAGATTCTTA TATTGAAATT TCATCCAAAT AAATGACAAG 
    AGGTGAGTCA ACACCAAAAG GGCGTGTGAG TATGAGAGTC AAAGATAGCA 
    CTAACTATAC GATGCGGGAA GTCAGCAGTT TAGTCACACG TGTCAACCTA 
    TGATTTAAGG AGAGTTGGTG TATTTGTCAC AGAATCATTA AAATTTGGTA 
    AAGTTAGAAA TAGAGGGGCC AGTGCTAGTG TTGTTTAGTC GTTACAACAA 
    AACCTCAACG GTTTTTGTTT GCAACTTTAC CAAAATGAAT ACCCTCATCC 
    ACAAACTCTT TTCTAATCAA CAAAGTATTG AAATTTTCAG TTACATACTA 
    GTATTTACTA TTTACATACT AGTATTTTTG GGCTAGTAGA AGAGTGTATT 
    TGAAAAATTA GAGGAGAAAA AAAGTCAGCG TGGAGGAATA AAGGTGTGAG 
    ATCGCATGTT ACATGTTTGA TCAACGGCTC TTCACTTCAT CATTCAATAC 
    TCTTTTTTTT TTTNTTTTTT TTGGGCNNAN NCTGNCNNNN AATNANAAAA 
    ACNNTACNNG TNNNTTTTTT TTTTTTANAG GNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 357231 [Map]; Strand: c
      • AT1G02030.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-3944-1 - 3-prime edge 
    CTTGTACGTG TCTATATGTG TCAATTGTTG TTAAAGTACA TGTCCTCAAG 
    TTAATTGATT AAAGATCTTT TGAGTGGCCC AAAGAGTCAT ATACTTTGCT 
    TGAGCTTTTC TCAAAGAGAA ATTGGAGGAT ATCAGTTGAC ATTAATCAAA 
    TTCCCCCCGC TAATCCTAGT TTTCAGCTGA TGGTTGGTGG GCTTCCTAAA 
    GTCAAAAGTT CATAACTTGT AATGGCAACC ACTCATTAAT AACATATATG 
    CGAGATAAAA ATGACTCTTT TCTTGTAATC GTATTGAGAG AAATGACCCT 
    TTCCTTGCAA TCGGTGCTTA ATTAAGAACC ACCAAAATTA TCAATTCCGT 
    TGAGGCGTTG ACTCATGTTC ATGTGTTTTC AGTGTAGTAA GAGCCTTTTG 
    ATTATTAACA TGATTAAAAT ATATATGGGC ATATCACGAG AGTTATTTGA 
    TACGTGATAT TCGTTTATTT ATTTGATATT TTTCTTCTTT GTGATTTCTT 
    AATTTCGAAT TTACAATTTC TTTTCTGGAA AACTTCAAAA TTATATCTCC 
    TTCTTGATGG CTTAACAAGT AAATTATATC ACTCTGTAGA TTACAAACAT 
    GAAATTAAAA CATTTGCGCT TATATGAGCA AGGAGCCCTT GGGTTATCTT 
    ACTTTATTCT CCACGTNTAT AATAATAAAA AATGATNCAA TTATCTATCT 
    TGGNTATAAC CTAGTTGGGG AAACCTTAAT TTTCT

AT1G02030.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT3G60580.1); Has 3215 Blast hits to 2725 proteins in 143 species: Archae - 0; Bacteria - 4; Metazoa - 2130; Fungi - 20; Plants - 967; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR