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12-4135-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22321249 [Map]; Strand: c
      • AT1G60590.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -4279; Region: intergenic
      • AT1G60600.1 - [+] show detail - UbiA prenyltransferase family protein
        Distance: 3396; Region: intergenic
    Flanking Genome Sequence: 12-4135-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TAGTACGTAG CACTGGCTTT TCTTGAAACA 
    GAGAAGTATT TCCACCACCA CAATGCATAT GTTCAAAATT CAATGAAATT 
    CCAAGTAGAT TGTTTTTAGC TAGATGTAGA TATGAGACAC GGATTTTACT 
    GTGAGCTATA TTTAATTAGT GATGATCGTT TCTATCAATA GCGTTTGTGT 
    TTTCTTTCAT AGCTAGATTA TATTGATTGG TTATCTTCAT TTTTTGTGTG 
    GAATTAATTG AATTTTCGTT CCACACTCCT AATTGGTGGT TTCATTGAAA 
    GTTGATAAAA AAGATAATAA TTGGATAATA TATAAAGGAA TACAATATTA 
    TTACAAGCCC TCCTTTGACT TCAGAGCTCG ACTCTTTGTG GTATTGGGCA 
    ATCTTCTTGA TCATGTGAAA AATATATGTG GACCGTACCA ATTTCTTGAT 
    ACGCCAAAAG AAGTAATCTG TTATATATGC CAATATGTGT TACCTGTCTT 
    CGAGGTTTTC ATATAAATTC CAACATTTAT AGTAATATAT TCTATCTATG 
    CGTATATGAT AAACTACACG TAACTGCATG TGTGCACATT TGTTGATATA 
    CACGGTGTAT ACTTTATTAT CGTTTATACC AAAAAGAAAA AAAAAAACAN 
    TCTTCNCTTN NCCGNTNNTT GGTTTGGCNN NAAANAAANA AAAAGNTNNC 
    NATGNNTTTT AAACAAAATC TTTTTTTTCC CANCTTTTNA AAAAAAAGTT 
    TNGGTTNGGG AAAAAAAAAA GNTTT

AT1G60590.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60600.1

Model type
Protein coding
Short Description
UbiA prenyltransferase family protein
Curator Summary
Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.
Computational Description
ABERRANT CHLOROPLAST DEVELOPMENT 4 (ABC4); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537), 1,4-dihydroxy-2-naphthoate phytyltransferase (InterPro:IPR011937); Has 2128 Blast hits to 2126 proteins in 766 species: Archae - 57; Bacteria - 1544; Metazoa - 40; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 438 (source: NCBI BLink).
Link
InterPro Scan - TAIR