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12-4140-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22701653 [Map]; Strand: w
      • AT1G61665.1 - [+] show detail - pseudogene, similar to serine/threonine kinase, blastp match of 55% identity ...
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G61540.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -845; Region: promoter
    Flanking Genome Sequence: 12-4140-1 - 5-prime edge 
    CTTGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA CGACCCTAGT CCATTGATAT AAACAAAGGC 
    CAAGCAAGAA CAATTGCGGA GACAAATCTG GTAACAATCT TCAGCATCCA 
    AAACACTTGC AAACCCTAAT GGATATATAA ACCCTTTGTA GCATTTAAAT 
    TTTGGAGGAA CGTGCGTCAC ACACAAACCA AAAGATCCAC ATCCACTGTA 
    CTAATCACAT GAGTTCGCTG GAGTCTCAAA GGTCATTATG CTGAAAAATC 
    CTGGCGATTT CTGAAACCCT TCTATCAAAA CCCTTCTGGC ATTCACAAGA 
    TCCAAATAGC TAAAAGAAAC CACCCCAACT CTTTGTAACC CTACATTCTC 
    GTTCAGGCAT TTCATCGAAC AGTTCAAGTG CATGCATACG CCACATGCGA 
    TTATAGTAAA CACTTAATGT TTTTGAACTG TATGTAGATT GACCGATTCA 
    ACCAGCTGGA AGCCAATTCG GCATTTAGGG GAAGCTGACG CAAATTTCCG 
    GTAAGAAGAT CCGGTCTAAA ATAGTGTTTC CGGTGATCAG GATTTGTCAC 
    TCCCGCTGAC AATAATATCT GATAGCTTTT CATATTAACC CCTAAAGAAT 
    GTTTGATATC CGATATTAAT CCCAAATTTT GTTTCATACT ATTTTCATNC 
    ACCAGATTCA GATCCATATA AAAAGGTTTT GTGACTCATT TACCTAATTC 
    AAAAACGTTT TCCGTAAGGC CCATTTACAT GCTAACT

AT1G61540.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39590.1); Has 1659 Blast hits to 1561 proteins in 111 species: Archae - 2; Bacteria - 82; Metazoa - 518; Fungi - 4; Plants - 1010; Viruses - 4; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61665.1

Model type
Pseudogene
Computational Description
pseudogene, similar to serine/threonine kinase, blastp match of 55% identity and 3.4e-14 P-value to GP|2181190|emb|CAA73134.1||Y12531 serine/threonine kinase {Brassica oleracea}
Link
InterPro Scan - TAIR