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12-4250-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17943929 [Map]; Strand: w
      • AT4G38290.1 - [+] show detail - Haemolysin-III related integral membrane protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 12-4250-1 - 5-prime edge 
    CTATAGAGCT GGGCTAGTGT ATCTTAAGTG GAGAGATATT GAAGGATGTT 
    GAAGATGAAG ATTAGATGGA TTCTTTGATG TTTTAAATCT TGTTTGTAGT 
    AGCTTCATAT AGAAGTTGGA TTATGTAAAG TCTTATCTGT AATCAAACGT 
    TTAATTGTTT CCTTTATTCA TCAAAAGGAT TCATATTGTT AATCTACATA 
    TTACTGGTTA AAGAAGCTGA AGGATTCATA TTTTTAGATG AGAGATACAC 
    TGTTTATTAT TGTTTTCAAT ATATGAGAGG AGGAGCTCCC ATACTATTTT 
    TATTTTTTTA GCCAATGAGA GAGCTCCGCT TCATACCCCA CTTTTACCAA 
    TCGTGCCATT TCACAGCCAC TCTCACCCAT GTCGCGTTGA GCGCGTGCCT 
    ACGAGTTCTA AAAGGGTTAA TCCACAAAAA TCATTCCTTT TAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17943813 [Map]; Strand: w
      • AT4G38290.1 - [+] show detail - Haemolysin-III related integral membrane protein
        Distance: 0; Region: exon3 (CDS)
    2. Chromosome: 2; Position: 16981183 [Map]; Strand: c
      • AT2G40710.1 - [+] show detail - Haemolysin-III related integral membrane protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4250-1 - 3-prime edge 
    CTCTATAGTG CGTGAACGCA CCAGCAACTA CCAGAACATG AAACAACTGA 
    TGGCTATGTC CTGCTATATC GAATTTACCC GGCATCCATC TCTCTGGGAT 
    C

AT2G40710.1

Model type
Protein coding
Short Description
Haemolysin-III related integral membrane protein
Computational Description
Haemolysin-III related integral membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 4 (TAIR:AT4G37680.2); Has 1248 Blast hits to 1248 proteins in 203 species: Archae - 0; Bacteria - 18; Metazoa - 711; Fungi - 269; Plants - 169; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38290.1

Model type
Protein coding
Short Description
Haemolysin-III related integral membrane protein
Computational Description
Haemolysin-III related integral membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 4 (TAIR:AT4G37680.2); Has 1144 Blast hits to 1144 proteins in 198 species: Archae - 0; Bacteria - 18; Metazoa - 607; Fungi - 265; Plants - 172; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR