Home
Mutant Lines
12-4313-1

12-4313-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 19669544 [Map]; Strand: c
- AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 0; Region: exon1 (CDS)
- AT2G48100.1 - [+] show detail - Exonuclease family protein
  Distance: -957; Region: promoter
- AT2G48100.4 - [+] show detail - Exonuclease family protein
  Distance: -957; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG GTACCNNNCG GCCTNATCCC 
TGATGGTGCT GCNCTNNCNC TNACNGNTTC TAGCTGGTGA ACATGCAGGC 
GGNNANGCCA CACATGTNGA CNTNGCACGT GANGNAGNNC CTGNTNTNNA 
CATNTNCCCT CACCCTCATG ATTCCTATGC TCAANNCNTG CTACGANATC 
TGANATAGAA AGATTTCCTA TGCCAGCGGN TGNCANTCNC NNGNANNTGC 
ATTATGTGAT CGAGCGCCAG ATAAATATCA GAGAATTTGG TNAAACNTCT 
GNTACNNCAT AANCCTATTG TGATGTTGNA AATGTTNGNG GATCGNANAA 
CAATACCTNA CACNNCNATT NNGAAGNTAC CACCCCNGGC CGANNACANN 
ACAGGNCNNN ANCTTTTACA AGTTTTTCAA AAAAGGAAGA GTGATGTTAG 
AAAGGGATCG GATTCTGATT CCACTATGTT TTCTTTCTTT CTTTCTTCTT 
CGTTGTTTTT GTTTTGGATT GTTACGTTCC TGTCAGGATT TGAGAATCAT 
GCATCANCTG TCACTCCTCT CAGGAGGGGG AGATTATATC TACTTGNAAC 
ATACTAATCT TCCAATAAAT AAGCNCTTCA CATATTATTA AAATACAGNA 
NATTCTCATA ATTAGGCCAT TTTCCATAAG CTACCANCCC GGGCCGNNAA 
CCACGCGNNC CCNTATA

AT2G48090.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.1

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.4

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR