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12-4557-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11186279 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1765; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4264; Region: intergenic
    Flanking Genome Sequence: 12-4557-1 - 3-prime edge 
    GCGGGTGGGA CCCACGGCGA ATGGTTCATC AAGTCTTCAA AAAAGAATAT 
    ATACGATTGC ATTGCATATA CTAACGGATG CGATCATACC AGCACTAATG 
    CACCGGATCC CATCAGAACT CCGCAGTTAA GCGTGCNTTG GGCGAGAGCA 
    GTACTAGGAT GGGTGACCTC CCGGGAAGTC CTCGTGTTGC ATCCCTCTTT 
    GATGTTTAAC CTTTTTTTTT NGGTTAAAAC TTTNTNACTC CNTAACTTTN 
    AGGCCGGNAG GCCAAACTNG GCNTGNNANN CCTTTTCGNA AANCCCAAAA 
    ACANCCCTCC NACAAAANAA NCAGGACANN GGANCTTTTC CNTNGACTTT 
    TTGTCAAACC ANCCNGGNCC GTCAACCACC CNGCCCCTAN AA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR