Home
Mutant Lines
12-4570-1

12-4570-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 16655307 [Map]; Strand: c
- AT5G41640.1 - [+] show detail - Protein of unknown function (DUF626)
  Distance: -672; Region: promoter
- AT5G41650.1 - [+] show detail - Lactoylglutathione lyase / glyoxalase I family protein
  Distance: 0; Region: exon2 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT TCTCAGAAAC ATGATCGCTG CGAAAAAAGA 
AAGCCTTTGA GAGGTCTTCT CAGCGATAAA CAGTGTAACA CAAAAGTCCA 
AATCCGGAAG TTATTTTAAG GGAATAAACT CAGAAAGTTT TCATTGAGGC 
AAATGATCAA CCAGGTTGTG TGCTTTGAGC AATAATGGAA CAAAAGAGGA 
GATAAAACCT AGGAGATTGC ATAAGAGCTA GCTTGATAGG ACCAGAATGG 
AGCTCAGCCC AGCGTAAAGT GACGACATTG ACGAAAAAGT CGAGACCTTG 
AGCATAGAAT CGAGCAGCTT TTGGTACGTC TCTGTGAAGC TGCAGAATCC 
ACCTAAACGA CGCCGTCGCC ATCTCTCTCT AGACGAAGAC GAACGAGTGT 
AAAATAAAAC ACAATACAAA AAAAAGATTG GCCATTTGAC CAAAAAAACA 
AAAACAAAAA CAAAAAAATT TTTGGCCCAA TACACATTAT TGGGCTTCTT 
TCGGGCTCAC CTCTAAATGG TACCGTGTCG CACTCTCTGC AATATAAACC 
AGATACGAGA TATCTATTGG TTTATTTGAA AAAAAGGAAA GANAATTTTT 
GGGTTGTTAA GGCCCAAATA AACCCATAAA TCAGNGGACT GGATTANATA 
ATAGAGGGGA CAATCCTAAA TTGATTGNGT GGAACAAAAN CNTGANCCGN 
TTGGTTCAAA CAATGTTGTT TTGG

3 prime edge [+] show sequence

Chromosome: 5; Position: 16689352 [Map]; Strand: c
- AT5G41740.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: 0; Region: exon3 (CDS)
- AT5G41740.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: 0; Region: exon3 (CDS)

TTTTAAACGG ANNAGGTATT TTACTGACCG TTACCGACCG TTACACCATT 
GGTAGGGATG GAAGCTCACT TGAAAAGATT GAACTCTTTG TTATGCCTGG 
AAAGTGATGA AGTCAAGATG ATTGGAATTT GGGGTCCAGC GGGAATTGGT 
AAGACTACCA TTGCTAGAGC TTTATTCGAC GACAGACTCT CTAGCAGTTT 
TCAACNTTAA ATGTTTTATG GACCTCAAGG GAAGTCTTAA GGGTGGTGCT 
GACCATGATT CCAAGTTGGG GTTGCAAAAG CAACTTCTGT CTAAGATTTT 
GAACCAAGAT GATTTGGAGA TACATCATTT AGGTGCAATC AAAGAGTGGC 
TACACAATCG AAGAGTGCTC ATCATTCTTG ACGATGTAGA TGATCTAAAG 
CAATTAGACG TATTGGCTGA ATATACTTCT TGGTTTGGTT CTGGCAGTCG 
GATCATCGTT ACCACAGAAG ATAAGAAGAT TTTGAAGGCA CATAGGATTC 
ACGATATCTA CCGTGTTGAT TATCCATCCA TGAAAGAAGC TCTTGAGATC 
TTATGTCTCT CTGCTTTCAA ACAAAGCTCT GTACTANATG GTTTTGAAGA 
GCTTGCCAAT AAAGTAGCTG AGCTTTGCGG CAATTCTTCC ATTAGGCCTT 
TNTGTCGTCC NGTGCATCTT TTGCGTGGGG AGAGCAAGCA CGANTGGGAA 
CCTTCATTAT CTACGATCGA CTCTAGTCNN GATAGGGATT TTGATGACAT 
TATCANNAAA AATCTTGTTN

AT5G41640.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF626)
Computational Description: Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24388.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G41650.1

Model type: Protein coding
Short Description: Lactoylglutathione lyase / glyoxalase I family protein
Computational Description: Lactoylglutathione lyase / glyoxalase I family protein; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G64185.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G41740.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Computational Description: Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G41740.2

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Computational Description: Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 3146 Blast hits to 2582 proteins in 174 species: Archae - 0; Bacteria - 334; Metazoa - 256; Fungi - 13; Plants - 2498; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link: InterPro Scan - TAIR