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12-4790-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24651056 [Map]; Strand: c
      • AT1G66180.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 2243; Region: intergenic
      • AT1G66190.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1739; Region: intergenic
    Flanking Genome Sequence: 12-4790-1 - 5-prime edge 
    GATTTTTCAG CCCAGCTCCA TTTTATGAGT GAGTACCAAC TGCACTTTAT 
    GTCTGCCATC AAATTCTTGA TGATTCATGA TCAGTAAGCA CATAAAAATG 
    AAAATTGAAC CCATCTTGGT CGGTCCAAAG TTGAAATAAT GAAGGAACTT 
    TCTTTTTTGC ACATTGCACT ACACAAATTC CCCACTTCGA TTGGAATAAT 
    GATAGTTCAT CGCGTCAATC GAGTCAAGCT ATATTACTTT CCGCGATTAG 
    AATCGTCATC TTTTCGCTTT CGTTTCTCCA TATATTATTG CACAATTGTT 
    AAGTCTTATT ATTTATTTTT TTCTGCAAGA ATTAAACTGG TTATAATACA 
    TATAAAGACC AAAAAGAACA TATAGTATGA TGTACAATAT GTAGCATAAT 
    AACGTTTTCT TCACCTTCAT AACATTTGCT TAAGGATTTT GGAGAGATAG 
    TTTTACTAAA TTATTCACAA TTTCACGAAT AAACTAACAA TCGTGTGTCA 
    TACAATAGAA ATGTATTAGA ACATTATTAA TCAATCGTAT GAAATAATTA 
    AAATAGGTTT CTCAACATCA TAAATTTTCG GATGATACTT GGTAAAACAT 
    AAAATATATC TTATAGAGTC ATCATTTGCT TGACAATGGC TTTACCGCAT 
    GCTAATCTTC TGGGGGATCA TGAGGNACAA GATCCACGAC CAACCCATGA 
    TATTTNGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24651172 [Map]; Strand: c
      • AT1G66180.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 2359; Region: intergenic
      • AT1G66190.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1623; Region: intergenic
    Flanking Genome Sequence: 12-4790-1 - 3-prime edge 
    GAAAAATCAT AGGAATCTTC ATGCACAATA GTAAGGCCAA AACCTTTGTT 
    TTTTATATAT AATAAACAAG TTGTTTGACA AAAAAAAANC TAGGTTTTAA 
    ACCCANGNGN GAGTNCTTTC TATNTNTTTT NGAAAAGTTN CNTNTGNGAT 
    NTANATNTNC CGGAAATTTA TTTTTAATTT ATNCGNGANG GGGATAATNT 
    NCNTCGAATA AAANAAAANT TNTNGGGNCC TAANCCCCNT AAAAGTTTAA 
    NCTNCCNCNG NGTCNAAAAT TNCANTAANT NTCCCCANTT NCAATANTTN 
    TANCAANGTA AATNTAAAAA ATTANTTTNT TNCAANGGGG GAATAATTTT 
    TTCANGACAT NTNCATNTTT TTTTNAANAT TCCGTNNTTT NNTTTNNNCT 
    TNNAAGGGGC ANGTTTTTNA AAAANAGTNN TTTTNGTAAT NGGNAGGGTN 
    TNATNCCNGT TCCAANTNCA CCTNTCAAAA NGTTAGAACC AANNGANCCT 
    ANGGGAAANT ACCCGTTTGT TNTNCAAAAA ACCTTTTTCG GTNTATTTTT 
    TTAAAAAAGN NCAAAAACNC GTTTNGGGTT NTTTNTTTGT NANGGNTAAA 
    ANANAGGGGG TTTCCNCCTA ANATATNTGN TTCCAACCCT NAAAAAAAAA 
    NAANTTTTTG NNNTTTTGGG AAGNGAAAAG GNTNNNANNN NGGGCGNNNA 
    ACNNCCCNGG CCNAANANCC CCAGANNANG NAN

AT1G66180.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G37540.1); Has 1897 Blast hits to 1884 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 164; Plants - 1696; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66190.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37550.1); Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR