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12-4800-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18205461 [Map]; Strand: w
      • AT4G39070.1 - [+] show detail - B-box zinc finger family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-4800-1 - 3-prime edge 
    AAGAAACACA ATAGATTCCT CCTTACCGGC GTTAAGATCT CTCCCTCCCC 
    GTCAGCCTAT CCAAGAGCCT CCAATTCCAA CTCTGCTGCT GCATTGGGTC 
    GAGCCAAAAC CCGACCAAAA TCAGTATCGA GCGAGGTCCC NGAGCTCGGC 
    CTCCAATGAG GTATTTACGA GCTCTTCTTC GACGACCACG AGCAATTGCT 
    ATTATGGGAT AGAAGAAAAC TACCATCACG TGAGCGATTC GGGGTCGGGA 
    TCGGGTTGTA CAGGTAGTAT ATCCGAGTAT TTGATGGAGA CATTACCGGG 
    TTGGAGAGTG GAGGATTTGC TTGAACACCC TTCTTGTGTC TCCTATGAGG 
    ATAACATTAT TACTAATAAC AATAACAGTG AGTCTTATAG GGTTTATGAT 
    GGTTCTTCAC AATTCCATCA TCAAGGGTTT TGGGAACAAA AACCCTTCTC 
    TTGAACTTAC TTCTGTCGAA TTATAGTCCT TTTTTTTAAA GTTGGGGTCT 
    GTAATCATGA ATCCAAACCA ACTTGTTGTT TTCGTTTTTT AGTATTGTTG 
    TTTCTATATT TATCTCACAT TATGATTTTT AAATTTATTT TGTCGACCAA 
    TCCTCTTTTA ATTTTAGTTT CTTTTTCTTT GAATTTAATT TCAGGTATTT 
    GTTGTATTGA TATCTATACA CTGTAACANA TGAAGAAGCT CTGGATACGT 
    ATTTGAAATC GATATGAAAT CAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18205577 [Map]; Strand: w
      • AT4G39070.1 - [+] show detail - B-box zinc finger family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-4800-1 - 5-prime edge 
    TGTTTCTTAG TGTGCTCATT AGCTTGATGT ATTGGAATGT CACATTCTCT 
    GCATAGTATT GCTCTGTCTT CTTGGCAAAA TAATAATGCA CGCCTCTCCT 
    GTCATATGTA TAAAGGTTTA GTACCATTTA ATAATAGATA ATCAAGAAGA 
    CTCTTGTTTT GTATCCATCT ATTTTAAAAC ATACTTATCT GCTAGATTTG 
    ACCTTTTCAA ACAAAAAATA TTCCATTTTA TTGTTTTATT TTATTTAATG 
    AACAGCAAAA AGAAATATCC TTTTCTCCAC GGCTTACCTT CCCAAAGAAG 
    AAAGTATTTT AATATCGTAA TAACTAATAA CTCGATTTAA TTGGTTAATA 
    TCTTAAGTTT GATTAGTGTG TAACCAAATA AATCACCAAG GTGTTTGGTA 
    AGCTCAATCT CTGTTCTCTT TTTGAGAAAA GTAATATTTG GTCGTGGCCA 
    TAAAATTCCT CGTCAAAAAT TGTGTGAAAC CTCAAATTTG CTAGGAAAGG 
    AAGTAAACTT GTTGCCAAAT AATCATTTTC TCACCAACCA ACAAACAAAT 
    CTCGGAAAGA AAGAAGAAAA AAAAAGTGAC TCAGGTCACC CGAAACATCC 
    GTTCATGAAA CCANATTTCC ATCAATACTA TAACATATCT AAAAGCTCAC 
    AAATNTTCCA AGTGAANATT ATAATTCTNT CAANAAAGGC AAAAAAAAAA 
    AAA

AT4G39070.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Computational Description
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: response to karrikin, response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homolog2 (TAIR:AT1G75540.1); Has 1892 Blast hits to 1305 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1793; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR