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12-4819-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24757155 [Map]; Strand: w
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 437; Region: intergenic
      • AT5G61570.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -1192; Region: intergenic
    Flanking Genome Sequence: 12-4819-1 - 3-prime edge 
    NTATAGANTG TGTGAACANT GCTCAAATGT TATTTCCTGT AAATTCAGTA 
    TNCGTTTGGC TAGCCCATTT ATTATTCTAT AACCATATTT ATGTCTTTCA 
    TAGCTATATC ATATAGAACC CACACAATTT AATGGCCTAG GTGTCAGATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23993231 [Map]; Strand: c
      • AT1G64590.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -302; Region: promoter
    Flanking Genome Sequence: 12-4819-1 - 5-prime edge 
    NNNATAGNAC TNAATNACTA CTNAGAAGAG AAGAAACATG CATTAGTGNA 
    NAGATNAANA ACCATACGCA AGACATGATA ATCGGAGGAA CCANGCACAT 
    ATCAGCNNNC ATGAAACAGC AANANACTAT GATNTATACC ATNGNAAGAT 
    TCATGATCTA TACANNTGTT NNCTGTTNAA AGGGCCGAAT NNAAACAAAC 
    AAACAANAAC ATCTTGAGGT NNGTATTTCT AGATCAGGCA AACCCAATTT 
    NNCATGTNNG CATTTGTANT TNNCCNNCCN AGAAGNGCCA NTANAGATNA 
    CNAGCCGGGG CCGNTGACCN NGCGTGCCAT NTANACATTN TNCNTTGACN 
    AGNGNNANAN ACCCANCTGG GGGGNTGATG GNCTNATGCC ATACAAGTTT 
    NTCAACTCCA TAGAGCGTTT ACAGTTATGG TGTATGTAAA TAACTGTGNT 
    ACNAGAATAC CGCGCNACAA TAATNGTTAT GAATGCTACA AGTGCATTTA 
    GGACCGCTTA TACTCTAAAC GAAGGAATAT AACAAAGACT TGATCCTTTN 
    TTAAAGCCTN TTATAATATA TCATNNGNAT ATGATNCATA CNTCAAACAC 
    GTAGTNAAAG NGATATTNNN AGAATATTCT TAAATNCCAC CTTTAGGNAA 
    TNGNNTNGNA NNAATNNNCC TTNGNAAAAT NGGNAGNGGG NGNANCAAAA 
    NATCNGGG

AT1G64590.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G24050.1); Has 62352 Blast hits to 62301 proteins in 3130 species: Archae - 564; Bacteria - 41137; Metazoa - 4183; Fungi - 3748; Plants - 2129; Viruses - 0; Other Eukaryotes - 10591 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61560.1

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1); Has 112471 Blast hits to 110615 proteins in 4538 species: Archae - 130; Bacteria - 13122; Metazoa - 41054; Fungi - 8748; Plants - 32669; Viruses - 288; Other Eukaryotes - 16460 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61570.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G07620.1); Has 83143 Blast hits to 82386 proteins in 2669 species: Archae - 65; Bacteria - 8087; Metazoa - 31019; Fungi - 5483; Plants - 27570; Viruses - 202; Other Eukaryotes - 10717 (source: NCBI BLink).
Link
InterPro Scan - TAIR